View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7726_low_23 (Length: 228)
Name: NF7726_low_23
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_23 |
 | |
|
| [»] scaffold0728 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0728 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3504 - 3277
Alignment:
| Q |
1 |
aaaaattaaccttgaatttccacaagcaaactatatactatcatgctataacagaaacattaataccaaattattcaataaatacacgaatcaaagtatt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3504 |
aaaaattaaccctgaatttccacaagcaaactatatactatcatgctataacagaaacattaataccaaattattcaataaatacacgaatcaaagtatt |
3405 |
T |
|
| Q |
101 |
aaccaaacatattatacagacaaataaaaagctccttaaattagtaagacaaaatcacaaaacatgacgaaataactgtaccgtattatttgaatcnnnn |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3404 |
aaccaaacaaattatacagacaaataaaaagctccttaaattagtaagacaaaatcacaaaacatgacgaaataactgtaccgtattatttgaatcaaaa |
3305 |
T |
|
| Q |
201 |
nnnttacattacatgatttgtgtacacc |
228 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
3304 |
aaattacattacatgatttgtatacacc |
3277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 19407938 - 19407711
Alignment:
| Q |
1 |
aaaaattaaccttgaatttccacaagcaaactatatactatcatgctataacagaaacattaataccaaattattcaataaatacacgaatcaaagtatt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19407938 |
aaaaattaaccctgaatttccacaagcaaactatatactatcatgctataacagaaacattaataccaaattattcaataaatacacgaatcaaagtatt |
19407839 |
T |
|
| Q |
101 |
aaccaaacatattatacagacaaataaaaagctccttaaattagtaagacaaaatcacaaaacatgacgaaataactgtaccgtattatttgaatcnnnn |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19407838 |
aaccaaacaaattatacagacaaataaaaagctccttaaattagtaagacaaaatcacaaaacatgacgaaataactgtaccgtattatttgaatcaaaa |
19407739 |
T |
|
| Q |
201 |
nnnttacattacatgatttgtgtacacc |
228 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
19407738 |
aaattacattacatgatttgtatacacc |
19407711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University