View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_low_24 (Length: 222)
Name: NF7726_low_24
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 21706194 - 21705988
Alignment:
| Q |
1 |
actatgatcagagcgtatcatcacagcgatccatgacaaagccaatttaggacaatcgctcacaagaagatcctttaaagagtgagatggccactttgca |
100 |
Q |
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| T |
21706194 |
actatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatcgttcacaacaagagcctttaaagagtgagatggccactttgca |
21706095 |
T |
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| Q |
101 |
tgacagtattcgggacatatcccaataaaattgtgaaggaaatggagtttgagtactttcagttgaggaagcatgatgtggttgtggtatttgtgagaag |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21706094 |
agacagtattcgggacatatcccaat-aaattgtgaaggaattcgagattgagtactttcagttgaggaagcatgatgtggttgtggtatttgtgagaag |
21705996 |
T |
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| Q |
201 |
aatgatgt |
208 |
Q |
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|||||||| |
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| T |
21705995 |
aatgatgt |
21705988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 21713336 - 21713543
Alignment:
| Q |
1 |
actatgatcagagcgtatcatcacagcgatccatgacaaagccaatttaggacaatcgctcacaagaagatcctttaaagagtgagatggccactttgca |
100 |
Q |
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||||||| |||| || ||||| | ||||||||| |||| | ||||||| |||||||| ||||| ||||||| | |||||||||||||||||||| ||| |
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| T |
21713336 |
actatgaccagaacgaatcataagagcgatccacgacatatccaatttgggacaatcctccacaacaagatccctcaaagagtgagatggccacttcgca |
21713435 |
T |
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| Q |
101 |
tgacagtattcgggacatatcccaataaaattgtgaaggaaatggagtttgagtactttcagttgaggaagcatgatgtggttgtggtatttgtgagaag |
200 |
Q |
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||||||||||| ||||| |||||||| | ||||| ||| || ||||||||| |||| |||||||| ||||||| ||||||| |||||| |||||| | |
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| T |
21713436 |
tgacagtattcaggacacatcccaatgagattgtcaagagaactgagtttgagaacttccagttgagaaagcatggtgtggttcaggtattggtgagatg |
21713535 |
T |
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| Q |
201 |
aatgatgt |
208 |
Q |
| |
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|||||||| |
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| T |
21713536 |
aatgatgt |
21713543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21709141 - 21709088
Alignment:
| Q |
1 |
actatgatcagagcgtatcatcacagcgatccatgacaaagccaatttaggaca |
54 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||| || ||||| |
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| T |
21709141 |
actatgatcagagcgtatcatcacagcgatccataacatagccaactttggaca |
21709088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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