View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7726_low_25 (Length: 206)

Name: NF7726_low_25
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7726_low_25
NF7726_low_25
[»] chr6 (1 HSPs)
chr6 (11-206)||(34611664-34611859)
[»] chr5 (1 HSPs)
chr5 (113-206)||(5963365-5963459)
[»] chr7 (5 HSPs)
chr7 (111-198)||(425913-426000)
chr7 (151-206)||(12110292-12110347)
chr7 (113-204)||(32791836-32791927)
chr7 (113-146)||(38600423-38600456)
chr7 (113-145)||(35331037-35331069)
[»] chr3 (4 HSPs)
chr3 (151-206)||(139917-139972)
chr3 (124-198)||(34958233-34958307)
chr3 (116-146)||(36587888-36587918)
chr3 (113-146)||(5435725-5435758)
[»] chr1 (3 HSPs)
chr1 (115-146)||(38578423-38578454)
chr1 (113-146)||(10280535-10280568)
chr1 (157-198)||(15942838-15942879)
[»] chr8 (1 HSPs)
chr8 (117-146)||(45099100-45099129)
[»] chr4 (1 HSPs)
chr4 (113-146)||(51560415-51560448)
[»] chr2 (1 HSPs)
chr2 (113-206)||(41880586-41880679)
[»] scaffold0018 (1 HSPs)
scaffold0018 (113-193)||(178623-178703)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 34611664 - 34611859
Alignment:
Q  11 gtgttgatgaagaataaacaggggggatatttggattcnnnnnnncgtaatcatgtgcttatggtataaacatatgtgtaagtgtattgagtgtttgtgt 110  Q
    ||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34611664 gtgttaatgaagaataaacaggggggatatttggattcaaaaaaacgtaatcatgtgcttatggtataaacatatgtgtaagtgtattgagtgtttgtgt 34611763  T
Q  111 ataacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34611764 ataacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt 34611859  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 5963459 - 5963365
Alignment:
Q  113 aacttaatttacagcttatagcataagcgcttat-attttaagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt 206  Q
    |||||||||| ||  |||||||||||||  |||| ||  ||||| |||||  | ||||||||||||| ||| |||||||||||||||||||||||    
T  5963459 aacttaatttgcaatttatagcataagcatttatcatgataagcgcttatgtacaaactatttctataatgaaagataaaataaagttaaattgt 5963365  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 426000 - 425913
Alignment:
Q  111 ataacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagt 198  Q
    |||||||| ||| |||||||||||||||||||||||  | |||  |||||| || ||  || |||||| || ||||||||||||||||    
T  426000 ataacttattttgcagcttatagcataagcgcttattgtataatttcttatgaacaagttaattctataatacaagataaaataaagt 425913  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 12110292 - 12110347
Alignment:
Q  151 taagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt 206  Q
    ||||| ||||| ||||| ||||||||||||  |||||||||||||||| |||||||    
T  12110292 taagcacttatgaataacctatttctattacacaagataaaataaagtcaaattgt 12110347  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 32791927 - 32791836
Alignment:
Q  113 aacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagttaaatt 204  Q
    |||||||||| |||||| |||||| |||  ||||  | ||| ||||||| ||||| ||| ||||||||  |||||||||||||||| |||||    
T  32791927 aacttaatttgcagcttgtagcattagcatttatcatataacctcttataaataagctacttctattacacaagataaaataaagtgaaatt 32791836  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 38600456 - 38600423
Alignment:
Q  113 aacttaatttacagcttatagcataagcgcttat 146  Q
    |||||||||| |||||||||||||||||||||||    
T  38600456 aacttaatttgcagcttatagcataagcgcttat 38600423  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 35331037 - 35331069
Alignment:
Q  113 aacttaatttacagcttatagcataagcgctta 145  Q
    |||||||||||||||||||||||||||| ||||    
T  35331037 aacttaatttacagcttatagcataagcactta 35331069  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 139917 - 139972
Alignment:
Q  151 taagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt 206  Q
    ||||| ||||| ||||| ||||||||||||  |||||||||||||||| |||||||    
T  139917 taagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 139972  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 34958233 - 34958307
Alignment:
Q  124 cagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagt 198  Q
    ||||||||||||||||||   ||  | ||||| ||||| |||||||||||||||| |  ||||||||||||||||    
T  34958233 cagcttatagcataagcgtgcatcatataagcacttatgaataaactatttctataacacaagataaaataaagt 34958307  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 36587888 - 36587918
Alignment:
Q  116 ttaatttacagcttatagcataagcgcttat 146  Q
    |||||||||||||||||||||||||||||||    
T  36587888 ttaatttacagcttatagcataagcgcttat 36587918  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 5435725 - 5435758
Alignment:
Q  113 aacttaatttacagcttatagcataagcgcttat 146  Q
    ||||||||||||||||||||||||||| ||||||    
T  5435725 aacttaatttacagcttatagcataagtgcttat 5435758  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 146
Target Start/End: Original strand, 38578423 - 38578454
Alignment:
Q  115 cttaatttacagcttatagcataagcgcttat 146  Q
    ||||||||||||||||||||||||||||||||    
T  38578423 cttaatttacagcttatagcataagcgcttat 38578454  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 10280535 - 10280568
Alignment:
Q  113 aacttaatttacagcttatagcataagcgcttat 146  Q
    |||||| |||||||||||||||||||||||||||    
T  10280535 aacttagtttacagcttatagcataagcgcttat 10280568  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 15942879 - 15942838
Alignment:
Q  157 cttattaataaactatttctattatgcaagataaaataaagt 198  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||    
T  15942879 cttatcaataagctatttctattatacaagataaaataaagt 15942838  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 45099129 - 45099100
Alignment:
Q  117 taatttacagcttatagcataagcgcttat 146  Q
    ||||||||||||||||||||||||||||||    
T  45099129 taatttacagcttatagcataagcgcttat 45099100  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 51560448 - 51560415
Alignment:
Q  113 aacttaatttacagcttatagcataagcgcttat 146  Q
    ||||||||||||||||||| ||||||||||||||    
T  51560448 aacttaatttacagcttattgcataagcgcttat 51560415  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 41880679 - 41880586
Alignment:
Q  113 aacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaataaagttaaattgt 206  Q
    |||||| ||| |||||||||||| ||||||||||  | |||   ||||| |||| |||||||||||||  || ||||||||||||  |||||||    
T  41880679 aacttactttgcagcttatagcacaagcgcttatcatgtaattgcttataaatatactatttctattacacacgataaaataaagcaaaattgt 41880586  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 178703 - 178623
Alignment:
Q  113 aacttaatttacagcttatagcataagcgcttatattttaagctcttattaataaactatttctattatgcaagataaaat 193  Q
    |||||||| ||| ||||||||| |||| ||||||  | |||||| |||  ||| ||||||||||||||  |||||||||||    
T  178703 aacttaatatactgcttatagcgtaagtgcttattatataagctgttaggaattaactatttctattacacaagataaaat 178623  T

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