View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_low_26 (Length: 203)
Name: NF7726_low_26
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 48578482 - 48578665
Alignment:
| Q |
13 |
gtgaaatcattattggggtttttgatttgtctaaaattggggattttgtatttgttagttgctatgatggatttggatcctctcaattgtgaagaaaaac |
112 |
Q |
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| T |
48578482 |
gtgaaatcaatattggggtttttgatttgtctaaaattggggattttgtctttgttagttgctgtgatggatttggatcctctcaattgtgaagaaaaac |
48578581 |
T |
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| Q |
113 |
ttgagagttatgtggatgatctcaccattaaaatgcatttgactctacaacctacataaaccaaatcctgctgtgatattcttc |
196 |
Q |
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| T |
48578582 |
ttgaaagttatgtggatgatctcaccattaaaatgcatttgactctacaacctacataaaccaaatcctgctgtgatactcttc |
48578665 |
T |
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Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 43873963 - 43874040
Alignment:
| Q |
83 |
atttggatcctctcaattgtgaagaaaaacttgagagttatgtggatgatctcaccattaaaatgcatttgactctaca |
161 |
Q |
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| T |
43873963 |
atttggatcctctcaattgtgaa-aaaaacttgagggttatgtggatgatttcaccattaaaatgcattgggctctaca |
43874040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 37295189 - 37295258
Alignment:
| Q |
83 |
atttggatcctctcaattgtgaagaaaaacttgaga--gttatgtggatgatctcaccattaaaatgcatt |
151 |
Q |
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| T |
37295189 |
atttggattctctcaattgcgaa-aaaaacttgagaaggttaagtggatgatctcaccattaagatgcatt |
37295258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 12678879 - 12678797
Alignment:
| Q |
82 |
gatttggatcctctcaattgtg-aagaaaaacttgagagttatgtggatgatctcaccattaaaatgcatttgactctacaac |
163 |
Q |
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| T |
12678879 |
gatttggatcctctcaattgtgaaaaaaaaacttgaatgttatttaaatgatattaccattaaaaagcattggactctacaac |
12678797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 35824463 - 35824508
Alignment:
| Q |
118 |
agttatgtggatgatctcaccattaaaatgcatttgactctacaac |
163 |
Q |
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| T |
35824463 |
agttatgtggatgatctcactattaaaattcattgggctctacaac |
35824508 |
T |
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