View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7726_low_4 (Length: 549)

Name: NF7726_low_4
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7726_low_4
NF7726_low_4
[»] chr1 (8 HSPs)
chr1 (177-528)||(9295798-9296157)
chr1 (230-413)||(9302101-9302283)
chr1 (1-145)||(9301733-9301877)
chr1 (260-400)||(41151320-41151463)
chr1 (230-400)||(35843946-35844120)
chr1 (257-390)||(8287079-8287212)
chr1 (473-504)||(9302290-9302321)
chr1 (357-395)||(38703134-38703172)
[»] chr8 (2 HSPs)
chr8 (257-391)||(7503983-7504118)
chr8 (352-398)||(41643311-41643357)
[»] chr5 (3 HSPs)
chr5 (237-387)||(14570289-14570442)
chr5 (260-325)||(30860682-30860747)
chr5 (357-398)||(30860781-30860822)
[»] chr6 (1 HSPs)
chr6 (357-400)||(22607137-22607180)
[»] chr4 (2 HSPs)
chr4 (279-395)||(29236659-29236779)
chr4 (370-398)||(394637-394665)
[»] chr2 (2 HSPs)
chr2 (239-398)||(32973593-32973751)
chr2 (357-398)||(662633-662674)
[»] chr3 (2 HSPs)
chr3 (239-362)||(10793633-10793756)
chr3 (282-400)||(53635416-53635534)
[»] chr7 (1 HSPs)
chr7 (277-326)||(5031298-5031347)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 177 - 528
Target Start/End: Complemental strand, 9296157 - 9295798
Alignment:
Q  177 tttctaaatattattttgttgtagataaatgtcagaaatacaataattttggtattttggtgtcaattatccattttttataagt--aaatgttcatttg 274  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||        |||||||||||||||| ||||||   |||||||| ||||    
T  9296157 tttctaaatattattttgctgtagataaatgtctgaaatacaataattttggt--------gtcaattatccattttctataaggtaaaatgttcgtttg 9296066  T
Q  275 tttatgggtaaaagttatgtttgaacaattgctagtatattttactagaacctaattgtttgtcaccgtaaatagttttagattttttgcaatacttttt 374  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9296065 tttatgggtaaaagttatgtttaaacaattgctagtatatttcactagaacctaattgtttgtcaccgtaaatagttttagattttttacaatacttttt 9295966  T
Q  375 aaataaaaattgtcaagattataacatggttttaaattttcgtggacggtcttcttctccaatgatttcgtg--------------gatttaaattttan 460  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||              |||||||||||||     
T  9295965 aaataaaaattgtgaagattataacatggttttaaattttcgtggactgccttcttcttcaatgctttcgtggacggcctttccatgatttaaattttat 9295866  T
Q  461 nnnnnnggttaggtttggaaatatctcttattagttagtcatgtannnnnnngtgtgtacacaacgta 528  Q
          ||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  9295865 ttttttggtaaggtttggaaatatctcttattagttagtcatgtatttttttgtgtgtacacaacgta 9295798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 230 - 413
Target Start/End: Original strand, 9302101 - 9302283
Alignment:
Q  230 attttggtgtcaattatccattttttataagtaaatgttcatttgtttatgggtaaaagttatgtttgaacaattgctagtatattttactagaacctaa 329  Q
    |||||||||||||||||||||| | |||| |||||||||| ||| ||| | |||||||||||||||||||||||||||||||||||| |||| ||| |||    
T  9302101 attttggtgtcaattatccattgtctataggtaaatgttcgtttctttgtaggtaaaagttatgtttgaacaattgctagtatatttcactacaacttaa 9302200  T
Q  330 ttgtttgtcaccgtaaatagttttagattttttgcaatactttttaaataaaaattgtcaagattataacatggttttaaattt 413  Q
    ||| | ||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9302201 ttg-tcgtcacagtaaatagttttagattttttataataatttttaaataaaaattgtcaagattataacatggttttaaattt 9302283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 9301733 - 9301877
Alignment:
Q  1 ttaaacaattattaaaggattgcatcaacttagataagagaatcagtacatattctccaacaggggatgtgcaagtgcaataaggcaattgacacatgac 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||  |||||| |  ||    
T  9301733 ttaaacaattattaaaggattgcatcagcttagataagagaatcggtacatattctccaacatgggatgtgcaagtgcaataaggcccttgacagagaac 9301832  T
Q  101 atcaaactttgaacggccacaaaatttgaagaaagaaaagaaagg 145  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||    
T  9301833 atcaaactttgaaaggccacacaatttgaagaaataaaagaaagg 9301877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 41151320 - 41151463
Alignment:
Q  260 gtaaatgttcatttgtttatgggtaaaagttatgtttgaa-caattgctagtatattttactagaacctaattgtttgtcaccgtaaat--agttttaga 356  Q
    ||||||||  |||||||| ||||||||||||||||||||| || ||||| |||||||| |||||||| ||  | ||||| ||  |||||  ||||  |      
T  41151320 gtaaatgtctatttgtttgtgggtaaaagttatgtttgaaccatttgcttgtatatttaactagaacgtatatatttgttactctaaatggagttgaatt 41151419  T
Q  357 ttttttgcaatactttttaaataaaaattgtcaagattataaca 400  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||    
T  41151420 ttttttccaatactttttaaattaaaattgtcaagattacaaca 41151463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 400
Target Start/End: Original strand, 35843946 - 35844120
Alignment:
Q  230 attttggtgtcaattatccattttttataagtaaatgttcatttgtttatgggtaaaagttatgtttgaacaattgctagtatattttactag-aaccta 328  Q
    |||||| |||||||||| |||| | ||||| ||||| |  |||||||| | ||||||||| | |||||||| |||||| |||||||| ||||  ||| ||    
T  35843946 attttgttgtcaattatacattgtatataaataaatatctatttgtttgtaggtaaaagtaacgtttgaacgattgcttgtatatttaactaacaactta 35844045  T
Q  329 attgtttgtcaccgtaaatagttttagattt-tttgcaatactttttaaat--aaaaattgtcaagattataaca 400  Q
    ||||| |||||   ||| | || ||| |||| ||| |||| ||||||||||  ||||||||||||||||||||||    
T  35844046 attgtctgtcatgataagtggtgttaaatttcttttcaattctttttaaatgaaaaaattgtcaagattataaca 35844120  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 390
Target Start/End: Original strand, 8287079 - 8287212
Alignment:
Q  257 taagtaaatgttcatttgtttatgggtaaaagttatgtttgaacaattgctagtatattttactagaacctaattgtttgtcaccgtaaatagttttaga 356  Q
    |||||||||||| |||| | ||| |||||| || |||||| ||  |||  |  ||||||| |||| ||| ||||||| |||| || |||||||| || ||    
T  8287079 taagtaaatgtttatttatctataggtaaaggtcatgtttaaatcattagtcatatatttgactacaacttaattgtctgtcgccataaatagtgttgga 8287178  T
Q  357 ttttttgcaatactttttaaataaaaattgtcaa 390  Q
    |||||| ||||  ||||||||| |||||||||||    
T  8287179 tttttttcaattatttttaaatgaaaattgtcaa 8287212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 504
Target Start/End: Original strand, 9302290 - 9302321
Alignment:
Q  473 gtttggaaatatctcttattagttagtcatgt 504  Q
    ||||||||||||||||||||||||||||||||    
T  9302290 gtttggaaatatctcttattagttagtcatgt 9302321  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 38703172 - 38703134
Alignment:
Q  357 ttttttgcaatactttttaaataaaaattgtcaagatta 395  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  38703172 tttttttcaatactttttaaatgaaaattgtcaagatta 38703134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 257 - 391
Target Start/End: Original strand, 7503983 - 7504118
Alignment:
Q  257 taagtaaatgttcatttgtttatgggtaaaagttatgtttgaacaattgctagtatattttactagaacctaattgtttgtcaccgtaaatagttttaga 356  Q
    |||||||||||| |||| | | | ||||||| | |||||||||| ||||||  ||||||| |||| ||| ||||||| ||||||| |||||||| || ||    
T  7503983 taagtaaatgtttatttatctgtaggtaaaaatcatgtttgaaccattgctcatatatttaactacaacttaattgtctgtcaccataaatagtgttgga 7504082  T
Q  357 -ttttttgcaatactttttaaataaaaattgtcaag 391  Q
     |||||| ||||  ||||||||| ||||||||||||    
T  7504083 ttttttttcaattatttttaaatgaaaattgtcaag 7504118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 398
Target Start/End: Original strand, 41643311 - 41643357
Alignment:
Q  352 ttagattttttgcaatactttttaaataaaaattgtcaagattataa 398  Q
    ||||||||||| ||||  ||||||||| |||||||||||||||||||    
T  41643311 ttagatttttttcaattatttttaaatgaaaattgtcaagattataa 41643357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 237 - 387
Target Start/End: Original strand, 14570289 - 14570442
Alignment:
Q  237 tgtcaattatccattttttataagtaaatgttcatttgtttatgggtaaaagttatgtttgaacaattgctagtatattttactagaacctaattgtttg 336  Q
    |||||||||| |||| || || |||||||||  |||| | | | |||||||||||||||||||  ||||||  ||||||  |||| ||| ||||||||||    
T  14570289 tgtcaattatgcattattcatgagtaaatgtctatttttatgtaggtaaaagttatgtttgaatcattgctcatatattgaactacaacttaattgtttg 14570388  T
Q  337 tcaccgtaaatagttttaga---ttttttgcaatactttttaaataaaaattgt 387  Q
    ||||| |||||||| || ||   |||||| |||| |||||||||| ||||||||    
T  14570389 tcaccataaatagtgttggattttttttttcaattctttttaaatgaaaattgt 14570442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 30860682 - 30860747
Alignment:
Q  260 gtaaatgttcatttgtttatgggtaaaagttatgtttgaacaattgctagtatattttactagaac 325  Q
    ||||||||  |||||| | |||||||||||||||||| ||| ||| || |||||||| ||||||||    
T  30860682 gtaaatgtctatttgtatgtgggtaaaagttatgttttaaccatttctcgtatatttaactagaac 30860747  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 30860781 - 30860822
Alignment:
Q  357 ttttttgcaatactttttaaataaaaattgtcaagattataa 398  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  30860781 ttttttccaatactttttaaattagaattgtcaagattataa 30860822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 22607180 - 22607137
Alignment:
Q  357 ttttttgcaatactttttaaataaaaattgtcaagattataaca 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  22607180 tttttttcaatactttttaaataaaaattgtcaagattataaca 22607137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 395
Target Start/End: Original strand, 29236659 - 29236779
Alignment:
Q  279 tgggtaaaagttatgtttgaacaattgctagtatattttactagaacctaattgtttgtcaccgtaaatagttt----tagattttttgcaatacttttt 374  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||| ||  |||||||||   ||| | || |    |  |||| ||||||||||||||    
T  29236659 tgggtaaaagtcatgtttgaaccattgctcgtatattttactagaacgtagatgtttgtcattttaagtggtgtcgaatttatttcttgcaatacttttt 29236758  T
Q  375 aaataaaaattgtcaagatta 395  Q
    |||| ||||||||||||||||    
T  29236759 aaattaaaattgtcaagatta 29236779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 398
Target Start/End: Original strand, 394637 - 394665
Alignment:
Q  370 tttttaaataaaaattgtcaagattataa 398  Q
    |||||||||||||||||||||||||||||    
T  394637 tttttaaataaaaattgtcaagattataa 394665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 398
Target Start/End: Original strand, 32973593 - 32973751
Alignment:
Q  239 tcaattatccattttttataagtaaatgttcatttgtttatgggtaaaagttatgtttgaacaattgctagtatattttactagaacctaattgtttgtc 338  Q
    |||||||| |||||||  |  ||||||||  |||||  |||||||||||||| ||||||||| ||||||  ||||||| |||||||| ||  ||||||||    
T  32973593 tcaattatacatttttcgttggtaaatgtctatttgcctatgggtaaaagttttgtttgaaccattgcttatatatttaactagaacatagatgtttgtc 32973692  T
Q  339 accgtaaatagttttagattttttgcaatactttttaaataaaaattgtcaagattataa 398  Q
    ||  ||| | || ||  ||||||| | |||||||||||||  ||||||||| ||||||||    
T  32973693 actctaagtggtgttgaatttttttc-atactttttaaatttaaattgtcaggattataa 32973751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 662633 - 662674
Alignment:
Q  357 ttttttgcaatactttttaaataaaaattgtcaagattataa 398  Q
    |||||| |||| ||||||||||||||||||| ||||||||||    
T  662633 tttttttcaattctttttaaataaaaattgtgaagattataa 662674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 10793756 - 10793633
Alignment:
Q  239 tcaattatccattttttataagtaaatgttcatttgtttatgggtaaaagttatgtttgaacaattgctagtatattttactagaacctaattgtttgtc 338  Q
    |||||||| || | || ||| ||||||||  |||| | ||| ||||||||| |||||||||  ||||||  ||||||| |||| ||| ||||||||||||    
T  10793756 tcaattatgcactattcataggtaaatgtctatttatctataggtaaaagtcatgtttgaatcattgctcatatatttaactaaaacttaattgtttgtc 10793657  T
Q  339 accgtaaatagttttagatttttt 362  Q
    | | |||||||| || ||||||||    
T  10793656 atcataaatagtgttggatttttt 10793633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 400
Target Start/End: Original strand, 53635416 - 53635534
Alignment:
Q  282 gtaaaagttatgtttgaacaattgctagtatattttactagaacctaattgtttgtcaccgtaaatagttttagattttttgcaatactttttaaataaa 381  Q
    |||||| | |||||||||| ||| ||| | ||||| |||| |||  ||||||||||||   |||   || || ||||||||  ||| |||||||||||||    
T  53635416 gtaaaaatcatgtttgaaccattactaatttatttaactacaactcaattgtttgtcagtataagcggtgttggattttttttaattctttttaaataaa 53635515  T
Q  382 aattgtcaagattataaca 400  Q
    |||| ||||||||||||||    
T  53635516 aattatcaagattataaca 53635534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 5031298 - 5031347
Alignment:
Q  277 tatgggtaaaagttatgtttgaacaattgctagtatattttactagaacc 326  Q
    |||||||||||||||||||||||| | |||| |||||||| |||||||||    
T  5031298 tatgggtaaaagttatgtttgaaccactgctcgtatatttaactagaacc 5031347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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