View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7726_low_8 (Length: 473)
Name: NF7726_low_8
Description: NF7726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7726_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 336 - 457
Target Start/End: Complemental strand, 33118868 - 33118747
Alignment:
| Q |
336 |
taattttaattaatttgttaaaccgtgcaggttgacattaataccgtgctaaaaaagaagaacgtgtacttgtttgtttctactctagatgtcacggagg |
435 |
Q |
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| T |
33118868 |
taattttgatcaatttgttgaaccgtgcaggttgacattaatgttgtgctaaaaaagaagaacgtgtacttgtttgtttctactctagatgtcacggagg |
33118769 |
T |
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| Q |
436 |
aagaaattaccgcagtaagatc |
457 |
Q |
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| T |
33118768 |
aagaaattacagcagtaagatc |
33118747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 33118985 - 33118914
Alignment:
| Q |
259 |
taaagcagtattattagtgttttgttgatggtgacgatttataccattctaagcactaatctaacatgatat |
330 |
Q |
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| T |
33118985 |
taaagcagtatttttagtgttttgttgatgttgatgatttatacaattctaagcattaaactaacatgatat |
33118914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 33119309 - 33119226
Alignment:
| Q |
10 |
attattctacatgttggaaacaaagttttaaatctttcatatgccttgaattctaatttgaaattacaaaattgataggttata |
93 |
Q |
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| T |
33119309 |
attatcctacatgtttgaaacaattttttaaatctttcacatgacttgaattctaaaatgaaattacaaaattgatatgttata |
33119226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 33119079 - 33119021
Alignment:
| Q |
194 |
agtagtccaaccaggagaaatatgaaagaaaaaagggacaaaattaacaataataatttct |
254 |
Q |
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| T |
33119079 |
agtagtccaaccgagagaaatatgaaa--ataaagggacaaaattaacaataataatttct |
33119021 |
T |
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