View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_high_1 (Length: 609)
Name: NF7727_high_1
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 246 - 579
Target Start/End: Complemental strand, 38538075 - 38537744
Alignment:
| Q |
246 |
gttggtttaagttcagctatttgtttgattaataattgtgtgctagtaattttaaatctgtcaacttaaaaccctcttatggatctaacttaaattctag |
345 |
Q |
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| T |
38538075 |
gttggtttaagttcagctatttgtttgattaataattgtgtgctggtaactttaaatctgtcaacttaaaaccctcatatggatctaacttaaattctag |
38537976 |
T |
|
| Q |
346 |
attgattactcaagttcattttttgaagtcaaacatgctcaatgggacattcatttgagatggtcaatgtcaagtttctagttatcataaatctacccnn |
445 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||| |||||| |
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| T |
38537975 |
attgattagtcaagttcattttttgaagtcaaacatgctcaatgggagattcatttgagatggtcaatatcaaatttctagttatcagaaa-ctaccc-a |
38537878 |
T |
|
| Q |
446 |
nnnnnntactattcacttttaggtttaggggtgtccacctcaaatctgtctaatacgattgattattcttggtaaattggtgtgcgaatgtgctcgaaaa |
545 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
38537877 |
aaaaaatactattcacttttaggtttaggggtgtccacctcaaatctgtctaaaacgattgattattcttagtaaattggtgtgcgaatgtgctcaaaaa |
38537778 |
T |
|
| Q |
546 |
cacaaaaaattggggtttcaagtatgttgacttt |
579 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
38537777 |
cacaaaaaattggggtttcaattatgttgacttt |
38537744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 38538304 - 38538133
Alignment:
| Q |
18 |
agtttatttcttgtctataaattgtaaaatcaatt-ccatgcaaatgattaaatttttgtttgataaaactacacctaaacagataacacatccgtcctc |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
38538304 |
agtttatttcttgtctataaattgtaaaatcaatttccatgcaaatgattaaatttttgtttgataaaactacacctaaacatataacacattcgtcctc |
38538205 |
T |
|
| Q |
117 |
agaagataacttcatactggtaacaatgaaagaaagatgtatccaactcaaacctatctatattagtgtata |
188 |
Q |
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| T |
38538204 |
agaagataactttatactggtgacaatgaaagaaagatgtatccaactcaaacctatctatattagtgtata |
38538133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 15128852 - 15128952
Alignment:
| Q |
80 |
ataaaactacacctaaacagataacacatccgtcctcagaagataacttcatactggtaacaatgaaagaaagatgtatccaactcaaacctatctatat |
179 |
Q |
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||||||||||||||||| | ||||||||||| ||||| | ||||||||| || | ||| |||||||| ||||||| ||||||||| ||||||||| |
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| T |
15128852 |
ataaaactacacctaaatacataacacatcctccctcacatgataacttcttattaacaacgctgaaagaacgatgtatgaaactcaaacatatctatat |
15128951 |
T |
|
| Q |
180 |
t |
180 |
Q |
| |
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| |
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|
| T |
15128952 |
t |
15128952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 55314033 - 55314001
Alignment:
| Q |
18 |
agtttatttcttgtctataaattgtaaaatcaa |
50 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
55314033 |
agtttattttttgtctataaattgtaaaatcaa |
55314001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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