View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7727_high_12 (Length: 409)
Name: NF7727_high_12
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 122 - 405
Target Start/End: Complemental strand, 6366195 - 6365916
Alignment:
| Q |
122 |
gtttcatttttggagaaaaaagtagttacaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6366195 |
gtttcatttttggagaaaaaagtagttacaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaat |
6366096 |
T |
|
| Q |
222 |
aaatctcttcctcccatgatttgctgttttgtgttcttccttctcccatcatttattttttgttttaacaagagaacaacacaaacaaaggtacaaggtt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6366095 |
aaatctcttcctcccatgatttgctgttttgtgttcttccttctcccatcatttattttttgttttaacaagagaacaacacaaacaaaggtacaaggtt |
6365996 |
T |
|
| Q |
322 |
taagccttgtttgttaacacttcacaaggaaagaacataaatggttcctccctttaagcctctgtaacggcatattcttcgaca |
405 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
6365995 |
taagcct----tgttaacacttcacaaggaaagaacataaatggttcctccctttaagcctctgtaacggcattttctttgaca |
6365916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 6414375 - 6414268
Alignment:
| Q |
137 |
aaaaaagtagttacaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaataaatctcttcctccc |
236 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||| ||||||||| |||||||| | ||| ||||||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
6414375 |
aaaaaggtacttacaggttgttgttgaaaattggtggtgctatgaagaaatagggtgaaatggatgaactgaaaatggttccagtaaatctcttcctccc |
6414276 |
T |
|
| Q |
237 |
atgatttg |
244 |
Q |
| |
|
| |||||| |
|
|
| T |
6414275 |
aagatttg |
6414268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 6356451 - 6356353
Alignment:
| Q |
149 |
acaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaataaatctcttcctcccatgatttgctg |
247 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| | | ||||| ||||| |||||||||| ||| |||||||||| |||||| ||||||||| |
|
|
| T |
6356451 |
acaagttgttgttgaaaatcggtggtggtttgaagaaattggatgaaatgaatgaactgaaaatgggtccagtaaatctctttctcccaagatttgctg |
6356353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 6366309 - 6366265
Alignment:
| Q |
17 |
atatataaccaataatcaaaagctcaaaactttcttcactgcagt |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6366309 |
atatataaccaataatcaaaagctcaaaactttcttcactgcagt |
6366265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 6397290 - 6397191
Alignment:
| Q |
147 |
ttacaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaataaatctcttcctcccatgatttgct |
246 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| || ||||||| ||| ||||| ||||| ||||| ||| |||| |
|
|
| T |
6397290 |
ttacaagttgttgttgaaaattggtggtagtttgaagaaattgggtgaaatggatgaactggaaatgggtccagtaaatatcttcttcccaagatctgct |
6397191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 6371972 - 6371883
Alignment:
| Q |
149 |
acaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaataaatctcttcctcccatgat |
241 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| | ||| ||||||||||| ||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
6371972 |
acaagttgttgttgaaaatgggtggtgctc---agaaatagggtgaaatggatgaactgaaaatggttccagtaaatctcttcctcccgtgat |
6371883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 6346940 - 6346846
Alignment:
| Q |
147 |
ttacaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaataaatctcttcctcccatgatttg |
244 |
Q |
| |
|
|||||||||| || |||||||||||| |||| ||||||| ||| ||||||||||| |||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
6346940 |
ttacaagttgatggtgaaaatcggtgatgctc---agaaaaagggtgaaatggatgaactgaaaatgggtccaataaatgagttcctccaatgatttg |
6346846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 6427013 - 6426924
Alignment:
| Q |
149 |
acaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaataaatctcttcctcccatgat |
241 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||| || ||||||||||| |||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
6427013 |
acaagttgttgttgaaaatcagtgttgc---gaagaaattgagtgaaatggatgaactgaaaatgggtccagtaaatgtcttcctcccatgat |
6426924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 6357879 - 6357830
Alignment:
| Q |
194 |
aaatggatgaattgaaaatgggaccaataaatctcttcctcccatgattt |
243 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
6357879 |
aaatggatgaactgaaaatgggtccagtaaatgtcttcctcccatgattt |
6357830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 6379548 - 6379499
Alignment:
| Q |
194 |
aaatggatgaattgaaaatgggaccaataaatctcttcctcccatgattt |
243 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
6379548 |
aaatggatgaattggaaatgggtccagtaaatgtcttcctcccatgattt |
6379499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 6438652 - 6438600
Alignment:
| Q |
194 |
aaatggatgaattgaaaatgggaccaataaatctcttcctcccatgatttgct |
246 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||| ||||| ||| |||| |
|
|
| T |
6438652 |
aaatgaatgaattgaaaatgggtccaataaatatcttcttcccaagatctgct |
6438600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University