View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7727_high_17 (Length: 361)

Name: NF7727_high_17
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7727_high_17
NF7727_high_17
[»] chr3 (2 HSPs)
chr3 (50-353)||(40010329-40010630)
chr3 (33-89)||(3571305-3571361)
[»] chr5 (1 HSPs)
chr5 (33-89)||(34503838-34503894)
[»] chr7 (2 HSPs)
chr7 (38-89)||(36056504-36056555)
chr7 (33-89)||(45850286-45850342)
[»] chr4 (2 HSPs)
chr4 (33-90)||(9102675-9102732)
chr4 (225-261)||(17033650-17033686)
[»] scaffold0462 (1 HSPs)
scaffold0462 (33-89)||(12248-12304)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 50 - 353
Target Start/End: Complemental strand, 40010630 - 40010329
Alignment:
Q  50 ttgtctttggcactataattgtcaaaaatataaaattatagcgggcgaaaattatacatacaaaactaataaattctatgtgaattcctttatatgaaat 149  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||    
T  40010630 ttgtctttggcactataattgtcataaatataaaattatagcgggcgaaaattatacatacaaaacttataaattctatatgaatttctttatatgaaat 40010531  T
Q  150 ttttgacttgctatgaaaatgtcctacattggcttt-ctcaaaccactcaacttatcatcatatcccattgtagctctacaataataaaatatatttatt 248  Q
     ||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  40010530 gttttacttactatgaaaatgtcctacattggcttttctcaaaccactcaacttatcat---atcccattgtagctctacaataataaaatatatttatt 40010434  T
Q  249 aaaattgtcttgtaaaacctcataattaagttacatgcaaggtaaaaacttacgaattaacaaaatgtttgatatctttctttgggtaggttgtgtattc 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  40010433 aaaattgtcttgtaaaacctcataattaagttacatgcaaggtaaacacttacgaattaacaaaatgtttgacatctttccttgggtaggttgtgtattc 40010334  T
Q  349 ttctc 353  Q
    |||||    
T  40010333 ttctc 40010329  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 3571361 - 3571305
Alignment:
Q  33 cactaataattgaagggttgtctttggcactataattgtcaaaaatataaaattata 89  Q
    |||| ||||||||| ||||||||||||||||| | |||||| |||||| ||||||||    
T  3571361 cactcataattgaaaggttgtctttggcactacagttgtcataaatatgaaattata 3571305  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 34503894 - 34503838
Alignment:
Q  33 cactaataattgaagggttgtctttggcactataattgtcaaaaatataaaattata 89  Q
    |||| ||||||||| ||||||||||||||||||| |||||| |||||| ||||||||    
T  34503894 cactcataattgaaaggttgtctttggcactatagttgtcataaatatgaaattata 34503838  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 36056555 - 36056504
Alignment:
Q  38 ataattgaagggttgtctttggcactataattgtcaaaaatataaaattata 89  Q
    ||||||||| ||||||||||||||||| |||||||| |||||| ||||||||    
T  36056555 ataattgaaaggttgtctttggcactacaattgtcataaatatgaaattata 36056504  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 45850342 - 45850286
Alignment:
Q  33 cactaataattgaagggttgtctttggcactataattgtcaaaaatataaaattata 89  Q
    |||| ||||||||| |||| |||||| ||||| |||||||| |||||||||||||||    
T  45850342 cactcataattgaaaggttttctttgacactacaattgtcataaatataaaattata 45850286  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 9102675 - 9102732
Alignment:
Q  33 cactaataattgaagggttgtctttggcactataattgtcaaaaatataaaattatag 90  Q
    |||| ||||||||| ||||||||||||||||| | |||||| |||||| |||||||||    
T  9102675 cactcataattgaaaggttgtctttggcactacagttgtcataaatatgaaattatag 9102732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 17033686 - 17033650
Alignment:
Q  225 ctacaataataaaatatatttattaaaattgtcttgt 261  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17033686 ctacaataataaaatacatttattaaaattgtcttgt 17033650  T

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Target: scaffold0462 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 12248 - 12304
Alignment:
Q  33 cactaataattgaagggttgtctttggcactataattgtcaaaaatataaaattata 89  Q
    |||| ||||||||| ||||| ||||||||||| | |||||| |||||| ||||||||    
T  12248 cactcataattgaaaggttgcctttggcactacagttgtcataaatatgaaattata 12304  T

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