View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_high_20 (Length: 338)
Name: NF7727_high_20
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 31262084 - 31261933
Alignment:
| Q |
18 |
atggccataacgaaggatttcggaacgaagattattgtctaatgggtctaataaaccttcccaattggtcataccttggtattctttccatcttttgtta |
117 |
Q |
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| T |
31262084 |
atggccataacgaaggatttcggaacgaagattattgtctaatgggtctaataaaccttcccaattggtcataccttggtattctttccatcttttgtta |
31261985 |
T |
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| Q |
118 |
actttcgtagttggaaatggtaatggtgaaaatgttgattttgatgatgaaa |
169 |
Q |
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| T |
31261984 |
acttttgtagttggaaatggtaatggtgaaaatgttgattttgatgatgaaa |
31261933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 31261862 - 31261780
Alignment:
| Q |
240 |
aagtgttatgcattgtggtctgatagtgaaggttgtggttttggggaaagaaatgtgggatgtagtgtggtttaaggatgtca |
322 |
Q |
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| T |
31261862 |
aagtgttatgcattgtggtttgatagtgaaggttgtggttttggggaaagaaatgtgggatgtagtgtggtttaaggatgtca |
31261780 |
T |
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