View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_high_25 (Length: 315)
Name: NF7727_high_25
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 31131853 - 31131550
Alignment:
| Q |
1 |
aattttttcactttccataaaaatggaacagcagcgtttatcctgtcgccgctgattcgtgtgctatcgtcaaaagctttcacaaacgcgatttcgggaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31131853 |
aattttttcactttccataaaaatggaacatcagcgtttatcctgtcgccgctgattcgtgtgctatcgtcaaaagctttgacaaacgcgatttcgggaa |
31131754 |
T |
|
| Q |
101 |
gagaagggaggagatactccgggtcgaatccaaatgcaattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggagaatcat |
200 |
Q |
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| T |
31131753 |
gagaagggatgagatattccggatcgaatccaaatgtgattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggaggatcat |
31131654 |
T |
|
| Q |
201 |
ttggtttttggaggcttcatggagaataggaagcagacgatcgttaagttcaacatccaccaccttttcgatgaatttgcggagggatttagtgttgaat |
300 |
Q |
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| T |
31131653 |
ttagtttttggaggcttcatggagaataggaaggagacggtcgttaagttcaacatccaccaccgtttcgatgaatttgcatggggatttagtgttgaat |
31131554 |
T |
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| Q |
301 |
tcat |
304 |
Q |
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|||| |
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| T |
31131553 |
tcat |
31131550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 31127139 - 31126842
Alignment:
| Q |
7 |
ttcactttccataaaaatggaacagcagcgtttatcctgtcgccgctgattcgtgtgctatcgtcaaaagctttcacaaacgcgatttcgggaagagaag |
106 |
Q |
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| T |
31127139 |
ttcactttccatagaaatggaatcgctgcatttaacctctcactgctgattcgtgagctatcatcaaaggctttaacaaacgctgtttcgggaagagaag |
31127040 |
T |
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| Q |
107 |
ggaggagatactccgggtcgaatccaaatgcaattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggagaatcatttggtt |
206 |
Q |
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| T |
31127039 |
ggaggagatactccggatcaaatccaaacgcaattatgcaaatattatcaaacgtgaaacgttggagaatatcttgaaaattagcgagaattgttttgtt |
31126940 |
T |
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| Q |
207 |
tttggaggcttcatggagaataggaagcagacgatcgttaagttcaacatccaccaccttttcgatgaatttgcggagggatttagtgttgaattcat |
304 |
Q |
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| T |
31126939 |
ttccgaaacttcagagagaattggaagaaggcgatcgttgagttcaacatcgacaacagtttcaacgaattttcggagggatttagtgttgaattcat |
31126842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 304
Target Start/End: Complemental strand, 31077765 - 31077524
Alignment:
| Q |
63 |
gctatcgtcaaaagctttcacaaacgcgatttcgggaagagaagggaggagatactccgggtcgaatccaaatgcaattatgcaaatattatcaaacgta |
162 |
Q |
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| T |
31077765 |
gctatcgtcaaaggcttttacaaacatggttttgggaagagaagaatgtaagtactccggatcgaatccaaacgcgattctgcagatactatcgaacgta |
31077666 |
T |
|
| Q |
163 |
aaacgttggagaatatcttgaaaatcagggagaatcatttggtttttggaggcttcatggagaataggaagcagacgatcgttaagttcaacatccacca |
262 |
Q |
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||||||||||| ||||||||||||||| | |||| | ||||||||||||| ||||| ||||||||||||||||||||| || |||||||| || || | |
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| T |
31077665 |
aaacgttggaggatatcttgaaaatcaagcagaaccgtttggtttttggaagcttcggagagaataggaagcagacgatcattgagttcaacctcgacga |
31077566 |
T |
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| Q |
263 |
ccttttcgatgaatttgcggagggatttagtgttgaattcat |
304 |
Q |
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| T |
31077565 |
cagtttcgacaaatttacgtagagacttagtgttgaattcat |
31077524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 38655148 - 38655083
Alignment:
| Q |
124 |
tcgaatccaaatgcaattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatca |
189 |
Q |
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| T |
38655148 |
tcgaaaccaaacgcgattttgcagatattgtcaaacgtgaaacgttggagaatgtcttggaaatca |
38655083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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