View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_high_27 (Length: 283)
Name: NF7727_high_27
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 50531656 - 50531417
Alignment:
| Q |
18 |
gtgaactttactggatctggaaacctattttaaaataagcttaaaatcttgagaatatacactagcttattttctttgtgtgtacaaagacgtgttgtta |
117 |
Q |
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| T |
50531656 |
gtgaactttactggatctggaaacctattttaaaataagcttaaaatcttgagaatatacactagcttattttctttgtgtgtacaacgacgtgttgtta |
50531557 |
T |
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| Q |
118 |
tgtgacatttgacaacaatctaattaaggacctctttcgtacatgaaagtgatttttacatacattgaaattaattggaatcaaaataataaaaggactt |
217 |
Q |
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| T |
50531556 |
tgtgacgtttgacaacaatctaattaaggacctctttcgtacatgaaagtgatttttacatacattgaaattaattggaatcaaaataataaaaggactt |
50531457 |
T |
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| Q |
218 |
gtggattaagttatccacttaatgcataacatggttagaa |
257 |
Q |
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| T |
50531456 |
gtggattaagttatccacttaatgcataacatggttagaa |
50531417 |
T |
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