View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7727_high_39 (Length: 229)

Name: NF7727_high_39
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7727_high_39
NF7727_high_39
[»] scaffold0007 (3 HSPs)
scaffold0007 (1-91)||(258692-258782)
scaffold0007 (146-211)||(258495-258560)
scaffold0007 (92-133)||(258618-258659)
[»] chr3 (6 HSPs)
chr3 (1-91)||(951730-951820)
chr3 (146-211)||(14174504-14174569)
chr3 (1-76)||(14174280-14174355)
chr3 (92-147)||(14174405-14174458)
chr3 (4-42)||(14174358-14174396)
chr3 (178-211)||(951896-951929)
[»] chr7 (3 HSPs)
chr7 (1-91)||(40723738-40723828)
chr7 (146-202)||(40723550-40723606)
chr7 (92-147)||(40723652-40723705)
[»] chr2 (1 HSPs)
chr2 (155-210)||(2193526-2193581)


Alignment Details
Target: scaffold0007 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 258782 - 258692
Alignment:
Q  1 ccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagagatccatggtgattacaataatttttaaac 91  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  258782 ccataagtgtgtaagaaagattcattcacactatcatttgattagttaaaacgtcaaaagagatccatggtgattacaataatttttaaac 258692  T

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Target: scaffold0007; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 258560 - 258495
Alignment:
Q  146 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatagt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  258560 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatagt 258495  T

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Target: scaffold0007; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 258659 - 258618
Alignment:
Q  92 acatttagattttagataatcaacttcaaaatttggggataa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  258659 acatttagattttagataatcaacttcaaaatttggggataa 258618  T

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Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 951730 - 951820
Alignment:
Q  1 ccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagagatccatggtgattacaataatttttaaac 91  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  951730 ccataagtgcgtaagaaagattcattcacactatcatctgattggttaaaacgtcaaaagagatccatggtgattacaataatttttaaac 951820  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 14174504 - 14174569
Alignment:
Q  146 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatagt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174504 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatagt 14174569  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14174280 - 14174355
Alignment:
Q  1 ccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagagatccatggtgatta 76  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  14174280 ccataagtgcgtaagaaagattcattcacactatcatctgattagttaaaacgtcaaaaaaggtccatggtgatta 14174355  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 14174405 - 14174458
Alignment:
Q  92 acatttagattttagataatcaacttcaaaatttggggataataatttatctctca 147  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  14174405 acatttagattttagataatcaacttcaaaatttggggata--aatttatctctca 14174458  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 14174358 - 14174396
Alignment:
Q  4 taagtgggtaagaaagattcattcacactatcatctgat 42  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  14174358 taagtgcgtaagaaagattcattcacactatcatctgat 14174396  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 951896 - 951929
Alignment:
Q  178 gaaaagtaatattcaaaatgtttttcagcatagt 211  Q
    ||||||||||||||||||||||||||||||||||    
T  951896 gaaaagtaatattcaaaatgtttttcagcatagt 951929  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 40723828 - 40723738
Alignment:
Q  1 ccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagagatccatggtgattacaataatttttaaac 91  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  40723828 ccataagtgcgtaagaaagattcattcacactatcatttgattagttaaaacgtcaaaagagatccatggtgattacaatcatttttaaac 40723738  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 40723606 - 40723550
Alignment:
Q  146 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgttttt 202  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  40723606 caaaagatataaaggatttccattttaatgaagaaaagtaatattcaaaatgttttt 40723550  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 40723705 - 40723652
Alignment:
Q  92 acatttagattttagataatcaacttcaaaatttggggataataatttatctctca 147  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  40723705 acatttagattttagataatcaacttcaaaatatggggata--aatttatctctca 40723652  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 2193526 - 2193581
Alignment:
Q  155 taaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag 210  Q
    ||||||||||  ||||||||||||| |||||  |||||||||||||||| ||||||    
T  2193526 taaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag 2193581  T

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