View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_high_4 (Length: 583)
Name: NF7727_high_4
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Complemental strand, 39424957 - 39424398
Alignment:
| Q |
18 |
ctatgtgcatcaaggtggtaaataccttcgcccagaactaccacacaacagcctggcattaggtttgttgccttttcaccaaatttggcatccacaaatt |
117 |
Q |
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| T |
39424957 |
ctatgtgcatcaaggtggtaaataccttcgcccagaactaccacacaacagcctggcattaggtttgttgccttttcaccaaatttggcatccacaaatt |
39424858 |
T |
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| Q |
118 |
ctgcaaattttatatttttatactggagaagatgcttgaaatctataggagatgcgcttaggatctgtttggtgacgtgagggaggataagaggcaatcc |
217 |
Q |
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| T |
39424857 |
ctgcaaattttatatttttatactggagaagatgcttgaaatctataggagatgcgcttaggatctgtttggtgatgtgagggaggataagaggcaatcc |
39424758 |
T |
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| Q |
218 |
ttcagaagtgattcggaaagcacattctacagacctaccttcacgtgacttttgtctttcctatatgatataagaggaaatagatttcacttggttattc |
317 |
Q |
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| T |
39424757 |
ttcagaagtgattcggaaagcacattctacagacctaccttcacgtgacttttgtctttcctatatgatataagagcaaatagatttcacttggttattc |
39424658 |
T |
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| Q |
318 |
acaagaaataaaagaacnnnnnnnnnnnnaataaaatgttatcaaactatttagacattatactgcaatacataatcagtatcaattatcatgcaaaaat |
417 |
Q |
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| T |
39424657 |
acaagaaataaaagaacttttttgtttttaataaaatgttatcaaactatttagacattatactgcaatacataatcagtatcaattatcatgcaaaaat |
39424558 |
T |
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| Q |
418 |
aaaatcacacaaaacagtagtagttgattacaatcatatccgatacaattcaacatgtgtttcgagtcgaatagaggaaaacagaaattgaaacagttga |
517 |
Q |
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| T |
39424557 |
aaaatcacacaaaacagtagtagttgattacaatcatatccgatacaattcaacatgtgtttcaagtcgaatagaggaaaacagaaattgaaacagttga |
39424458 |
T |
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| Q |
518 |
ctgcataaagtcatgggtgctaacttcttgaatatcaaagtgtaatagtactaacttatt |
577 |
Q |
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| T |
39424457 |
ctgcataaagtcatgggtgctaacttcttgaatatcaaagtgtaatagtactaacttatt |
39424398 |
T |
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