View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7727_high_40 (Length: 227)
Name: NF7727_high_40
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 38817817 - 38817605
Alignment:
| Q |
1 |
cctcatgtctcattcttctcacttcaatcaagagcagggatcatctacaaattaatatatgcnnnnnnnttaaaataccaaataatcactacgatgccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38817817 |
cctcatgtctcattcttctcacttcaatcaagagcagggatcatctacaaattaatatatgcaaaaaaattaaaataccaaataatcactacgatgccta |
38817718 |
T |
|
| Q |
101 |
aaagaaagtctccgaaattttaaatccctctgcaacctaatcacatttctatattttagatgatcggttttgagaagagatgggctttatgccctcgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38817717 |
aaagaaagtctccgaaattttaaatccctctgcaacctaatcacatttctatattttagatgatcggttttgagaagagatgggctttatgccctcgcaa |
38817618 |
T |
|
| Q |
201 |
gcaggttttatgt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38817617 |
gcaggttttatgt |
38817605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39458715 - 39458656
Alignment:
| Q |
1 |
cctcatgtctcattcttctcacttcaatcaagagcagggatcatctacaaattaatatatgc |
62 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
39458715 |
cctcatgtctcattcttcacacttcaatcaaga--cgggatcgtctacaaattaaaatatgc |
39458656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 12083157 - 12083048
Alignment:
| Q |
75 |
ataccaaataatcactacgatgcctaaaagaaagtctccgaaattttaaatccctctgcaacctaatcacatttcta--tattttagatgatcggttttg |
172 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| || ||||||| ||||||| || |||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
12083157 |
ataccaaataatcactaagatgcctaatagaatgtttccgaaacgataaatccttccgcaaacaaatcacatttctaatcattttagatgatcggttttg |
12083058 |
T |
|
| Q |
173 |
agaagagatg |
182 |
Q |
| |
|
|||||||||| |
|
|
| T |
12083057 |
agaagagatg |
12083048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12083251 - 12083192
Alignment:
| Q |
1 |
cctcatgtctcattcttctcacttcaatcaagagcagggatcatctacaaattaatatatgc |
62 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
12083251 |
cctcaagtctcattcttcacacttcaatca--agcagggatcatctacaaatttaaatatgc |
12083192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 20150533 - 20150479
Alignment:
| Q |
158 |
agatgatcggttttgagaagagatgggctttatgccctcgcaagcaggttttatg |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||| || ||||||| |
|
|
| T |
20150533 |
agatgatcggttttgagaagagatgtgctttatgcccttgcaaggagattttatg |
20150479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University