View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_high_41 (Length: 223)
Name: NF7727_high_41
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_41 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36134627 - 36134849
Alignment:
| Q |
1 |
actgtcataacaacacattatgccacctgatgtaaatatctctaatttacttgtttatatataagaaaaagactcgatgaaaatcatgacattccatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36134627 |
actgtcataacaacacattatgccacctgatgtacatatctttaatttacttgtttatatataagaaaaagactcgatgaaaatcatgacattccatcac |
36134726 |
T |
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| Q |
101 |
aaatcaatatttgttacaatgcacgttcatatatagtttgcaatgttttgttttatacatgcatgatttcagtttaatatattgatggtttgagtgatct |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||| ||||||||||||| |
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| T |
36134727 |
aaatcaatatttgttacaatgcatgttcatatatagtttgcaatgttttgtgttatacatgcatgattccagttaaatatatcgatcgtttgagtgatct |
36134826 |
T |
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| Q |
201 |
gaatattgttagcgatttctaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
36134827 |
gaatattgttagcgatttctaat |
36134849 |
T |
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