View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_high_5 (Length: 581)
Name: NF7727_high_5
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 38 - 563
Target Start/End: Original strand, 11525874 - 11526408
Alignment:
| Q |
38 |
cccatttttctttgggtttgagctagactcgacccatatctagtggcaa-tgatgggcttacaagaaggatcacgtttcatacaccccctagttaaaaca |
136 |
Q |
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| T |
11525874 |
cccatttttctttgggtttgagcta--ctcgacccatacctagtgggaaatgatgggcttacaataaggatcacgtttcaaacaccccctagttaaaaca |
11525971 |
T |
|
| Q |
137 |
tatttgctttatattagatgttaaaattggtatgtagcaagtctatcacataaagatgatttttgttcatattccaaacaaaata-tgaacaaaacagtg |
235 |
Q |
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| T |
11525972 |
tatttgctttatattagatgttaaaattggtacgtagcaagtctatcacataaagatgatttttgttcatattccaaacaaaaaaatgaacaaaactgcg |
11526071 |
T |
|
| Q |
236 |
gctgctacatgaaacaatagctgaacaacttaaaacacgaaaaagctatcccaacctcagaaataaac---------cagcaacaaaatcatcagtttcc |
326 |
Q |
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| T |
11526072 |
gctgctaaatgaaacaataactgaacaactcaaaacacgaaaaagctatcccaacctcagaaataaaccagccaaaccagcaacaaaatcatcagtttcc |
11526171 |
T |
|
| Q |
327 |
caacccaaaacagaagctcttaaccacaaaaaaccataaaaggctagctgaacctagaaaattgcagaaagctggaggaaaaacaaaacaacacctgggc |
426 |
Q |
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| T |
11526172 |
caacccaaaacataagctcttaaccacaaaaaaccataaaaggctagctgaacctagaaaattgcagaaaactggaggaaaaacaaaacaacacctgggc |
11526271 |
T |
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| Q |
427 |
aaaaatgtctaccatatactcattatatacatgtagtcttggatggtcatctttgtgttgcaacttttgaacacgtttaacatggcttgctctaacataa |
526 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| |
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| T |
11526272 |
aaaaatgtccaccatatactcattatatacatgtagtcttggatggtcatctttgtgttgcaacttttgaacacttttaacctggcttgctctaacttaa |
11526371 |
T |
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| Q |
527 |
gagaaaatagtagatgttgagtgtgtagaaggtaagt |
563 |
Q |
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| T |
11526372 |
gagaaaatagtaaatgttgagtgtatagaaggtaagt |
11526408 |
T |
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