View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_high_8 (Length: 453)
Name: NF7727_high_8
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 15330381 - 15329960
Alignment:
| Q |
17 |
aatgtggcagctcttctggcttcaacccacatgatgtcaatatatttattgaggctgctgtgcaacgtggagttgagaacctcgacattgacatgtccca |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15330381 |
aatgtggcagctcttctggcttcaacccacatgatgtcaatatatttattgaggctgctgtgcaacgtggagttgagaacctcgacattgacatgttcca |
15330282 |
T |
|
| Q |
117 |
taggggttatagctttaagttacctctttgtgttttcagttgcagtaacttaactgttcttaagttgaaggcgataaaaatgcatgaactttttaatgta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
15330281 |
taggggttatagctttaagttacctctttgtgttttcagttgcagtaacttaactgttcttaagttgaaggcgatgaaaatgcatgaactttttcatgtc |
15330182 |
T |
|
| Q |
217 |
aattttcccttgctcaaaactcttcatttggaggccattgatttcaaagacagtaatggtcgcagtctttggattctcctttatggctgtcccattttag |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15330181 |
aattttcccttgctcaaaactcttcatttggaggcaattgatatcaaagacagtaatggtcgcagtctttggattctcctttatggctgtcccattttag |
15330082 |
T |
|
| Q |
317 |
aggaattgcaaacaaatggtttcttatttcggcgtaagttgaaagctggtagagacttcaatggcttacacaaattggtcagagcaaatattatgaactt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15330081 |
aggaattgcaaacaaatggtttcttatttcggcgtaagttgaaggctggtagagacttcaatggcttacacaaattggtcagagcaaatattatgaactt |
15329982 |
T |
|
| Q |
417 |
gggttgcagtgttccgtttgat |
438 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
15329981 |
gggttgcagtgttccgtttgat |
15329960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 35396676 - 35396838
Alignment:
| Q |
27 |
ctcttctggcttcaacccacatgatgtcaatatatttattgaggctgctgtgcaacgtggagttgagaacctcgacattgacatgtcccataggggttat |
126 |
Q |
| |
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|||||||||||| |||| ||||||||||||| ||||||| | |||| ||| |||||||||||| || | ||| || |||| ||||||| | | |
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| T |
35396676 |
ctcttctggctttgacccgcatgatgtcaatagatttattcatgctgttgttcaacgtggagttcagtatctcaaccttgaaatgtcccctttcaaactt |
35396775 |
T |
|
| Q |
127 |
agctttaagttacctctttgtgttttcagttgcagtaacttaactgttcttaagttgaaggcg |
189 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||| ||| |||||||||||| |
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| T |
35396776 |
agctttaagttacctctttgtgttttcagttgcagtaacctcactgctctcaagttgaaggcg |
35396838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 11374405 - 11374552
Alignment:
| Q |
17 |
aatgtggcagctcttctggcttcaacccacatgatgtcaatatatttattgaggctgctgtgcaacgtggagttgagaacctcgacattgacatgtccca |
116 |
Q |
| |
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||||||| | |||||||||||| ||||| ||||||||||| | ||||||| | |||| ||| ||||||||| || |||| |||||| |||| ||| || |
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| T |
11374405 |
aatgtggtaactcttctggctttaacccgcatgatgtcaagagatttattcatgctgttgtccaacgtggaattcagaatctcgaccttgaaatgccctc |
11374504 |
T |
|
| Q |
117 |
taggggttatagctttaagttacctctttgtgttttcagttgcagtaa |
164 |
Q |
| |
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| || | ||||||||| |||||||||||||| |||||||||||||| |
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| T |
11374505 |
tccggatcttagctttaatttacctctttgtgtgttcagttgcagtaa |
11374552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 11377701 - 11377760
Alignment:
| Q |
128 |
gctttaagttacctctttgtgttttcagttgcagtaacttaactgttcttaagttgaagg |
187 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| | |||| |||||| ||||||| |
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| T |
11377701 |
gctttaagttacctcattgtgttttcagttgcagtaacctcactgctcttaaattgaagg |
11377760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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