View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_10 (Length: 533)
Name: NF7727_low_10
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 30 - 521
Target Start/End: Complemental strand, 43951198 - 43950706
Alignment:
| Q |
30 |
agaggaagaaaattttagtaaatacatatacaagttgtaagagtgaaaatagtgtcataatgaatatctccttctaaacctattttattcagaatctcct |
129 |
Q |
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| T |
43951198 |
agaggaagaaaattttagtaaatacatatacaagttgtaagagtgaaaatagtgtcataatgaatatctccttctaaacctattttattcagaatctcct |
43951099 |
T |
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| Q |
130 |
caatttgttcttaaatgtcgacagccagtttagagaactccttcaccattgatgtttgtaaatagcagctttccttacaattcctttctatttagatgca |
229 |
Q |
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| T |
43951098 |
caatttgttcttaaatgtcgacagccagtttagagaactccttcaccattgatgtttgtaaatagcagctttccttacaattcctttctatttagatgca |
43950999 |
T |
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| Q |
230 |
gatacctttcaaataggattttttaaagatgattggatttctctatagtagtttaagtcagataaaaatgggttaaatgcatcaaaattagcaatatcat |
329 |
Q |
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| T |
43950998 |
gatacctttcaaataggattttttaaagatgattggatttctctatagtagtttaagtcagataaaaatgggttaaatgcatcaaaattagcaatatcat |
43950899 |
T |
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| Q |
330 |
tgaaagatcaatgtctttcagtgcatatttcaagccaccccaagtcccgcgtaaccgcgttaactttgaggcacttaacctatttcatgggaatgaaaac |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43950898 |
tgaaagatcaatgtctttcagtgcatatttcaagccaccccaagtcccgcgtaaccgcgttaactttgaggcacttaacctattttatgggaatgaaaac |
43950799 |
T |
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| Q |
430 |
tagaagactgaccatcatctgaatcaaattatcttctagaagaattctactactgctaa-aaaattatcaagatacaacttctattgcatatt |
521 |
Q |
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| T |
43950798 |
tagaagactgaccatcatctgaatcaaattatcttctagaagaattctactactgctaaaaaaattatcaagatacaacttctattgcatatt |
43950706 |
T |
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