View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7727_low_12 (Length: 511)
Name: NF7727_low_12
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Complemental strand, 52824621 - 52824139
Alignment:
| Q |
11 |
gtgagaagaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgnnnnnnnnnnnnnataagatg |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52824621 |
gtgaaaagaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgatatatatatataataagatg |
52824522 |
T |
|
| Q |
111 |
tgacaatgttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgatctgttatccattttttcag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824521 |
tgacaatgttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgatctgttatccattttttcag |
52824422 |
T |
|
| Q |
211 |
aataatacagtggtgcttgaggaacacagatcctacgcatgctctcgctagagaaagaaaccagaatattttcctcatgaatatgataattagcatcatc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824421 |
aataatacagtggtgcttgaggaacacagatcctacgcatgctctcgctagagaaagaaaccagaatattttcctcatgaatatgataattagcatcatc |
52824322 |
T |
|
| Q |
311 |
atgcactatatgattctggtgttgtagttcatgagagggaacagaagaagaaggggaatcaaggaaatcttcaaacttccaacctgggatagtgtttatc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824321 |
atgcactatatgattctggtgttgtagttcatgagagggaacagaagaagaaggggaatcaaggaaatcttcaaacttccaacctgggatagtgtttatc |
52824222 |
T |
|
| Q |
411 |
aagtactcagatatagtaaaattaccagtttcttcatgaagagtgggaggaggagcaggagagtgcagcttgatcccacttag |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824221 |
aagtactcagatatagtaaaattaccagtttcttcatgaagagtgggaggaggagcaggagagtgcagcttgatcccacttag |
52824139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University