View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_13 (Length: 500)
Name: NF7727_low_13
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 42944827 - 42944354
Alignment:
| Q |
1 |
gggtttgaaattaagaaaccacactcaattacatacacaatatgaatcagaaagtatagaagagagttactttgagatgaaaaatttctctcaatgaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42944827 |
gggtttgaaattaagaaaccacactcaattacatacacaatatgaaacagaaagtatagaagagagttattttgagatgaaaaatttctctcaatgaaat |
42944728 |
T |
|
| Q |
101 |
ttgttgttcattatcaatgtaaattgtacttatacaagtgatcacatgataactccttagtaatagaaataatagaattaactgctcagatgtaactaac |
200 |
Q |
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| T |
42944727 |
ttgttgttcattatcaatgtaaattgtacttatacaagtgatcacatgataactccttagtaatagaaataatagaattaactgctcagatgtaactaac |
42944628 |
T |
|
| Q |
201 |
taactaaccaaatctatatcagttgatttacatcacaagatgctcgcttaattcattgatttacagccacatctcatctctctaaatcttagtcttgagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42944627 |
----taaccaaatctatatcagttgatttacatcacaagatgctcgcttaattcattgatttatagccacatctcatctctctaaatcttagtcttgagt |
42944532 |
T |
|
| Q |
301 |
agtagctttattagtatctcagctgcttgtacttctgtcctgcagtgacacaactcaattcttccctaaccgaaaaataaaacttaatttgttccaatat |
400 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42944531 |
agtagctttattagtatgtcagctgcttgtacttctgtcctgcagtgacacaactcaattcttccctaaccgaaaaataaaac----tttgttccaatat |
42944436 |
T |
|
| Q |
401 |
atttgctcatatcatgtgatactgagttctttagttcttttcaatggttattgatgatttgttgtcaacattcaattgtatc |
482 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944435 |
atttgctcctatcatgtgatactgagttctttagttcttttcaatggttattgatgatttgttgtcaacattcaattgtatc |
42944354 |
T |
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