View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_15 (Length: 441)
Name: NF7727_low_15
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 198 - 428
Target Start/End: Complemental strand, 51169487 - 51169254
Alignment:
| Q |
198 |
ggttaatctaccttatgagcaccaaataattccccatctttaaaaacctt---ctttcaaatttacgtgaaagaaatgttatgctttattattttccaga |
294 |
Q |
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| T |
51169487 |
ggttaatctaccttatgagcaccaaataattccccatctttaaaaaccttattctttcaaatttacgtgaaagaaatgttatgctttattattttccaga |
51169388 |
T |
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| Q |
295 |
caaccaaaccaagaacaaagttgttgtttacatgtgcatgtcattgaactaattacggattattaaaaacatcaccaaatggatcactacttggtgtggt |
394 |
Q |
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| T |
51169387 |
caaccaaaccaagaacaaagttgttgtttacatgtgcatgccattgaactaattacggattattaaaaacatcacaaaatggatcactacttggtgtggt |
51169288 |
T |
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| Q |
395 |
ttgacaagagcttcacaaactcaatgaccacagc |
428 |
Q |
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| T |
51169287 |
ttgacaagagcttcacaaactcaatgaccacagc |
51169254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 51169655 - 51169538
Alignment:
| Q |
10 |
gtgagaagaagagaaagatagatagaaaataagatattgaatagatgtgaaaaattaattcatatagttgaaaattttattaggcataataccaaatacc |
109 |
Q |
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| T |
51169655 |
gtgataagaagagaaagatagatagaaaataaaatattgaatagatgtgaaaaattaattcatatagttgaaaattttatcaggcataataccaaatacc |
51169556 |
T |
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| Q |
110 |
taattatttaaggttgtc |
127 |
Q |
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| T |
51169555 |
taattatttaaggttgtc |
51169538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 51153455 - 51153365
Alignment:
| Q |
276 |
tgctttattattttccagacaaccaaaccaagaacaaagttgttgtttacatgtgcatgtcattgaactaattacggattattaaaaacatca |
368 |
Q |
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| T |
51153455 |
tgctttattatattccggacaaacaacc--agaacaaagttgttgtctacatgtgcatataattgcactaattacggattattgaaaacatca |
51153365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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