View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_16 (Length: 435)
Name: NF7727_low_16
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 38069803 - 38069394
Alignment:
| Q |
8 |
gagtgagatgaagctttgtgaggaatatacttgtgtgatctctcatggacctaatccaagaaccactcacatattcgataattgcgtcgtcgaagagagt |
107 |
Q |
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| T |
38069803 |
gagtgagatggagctttgtgaggaatatacttgtgtgatctctcatggacctaatccaagaaccactcacatattcgataattgcgtcgtcgaagagagt |
38069704 |
T |
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| Q |
108 |
tactgttctctgccacaaaacaattctaactcatcttatggaaattttcttagagtttgctacacttgcaagaaacatcttgagcagacaaaagatatat |
207 |
Q |
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| T |
38069703 |
tactgttctctgccacaaaacaattctaactcatcttatggaaattttcttagagtttgctacacttgcaagaaacatcttgagcagacaaaagatatat |
38069604 |
T |
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| Q |
208 |
ttatttataggtgtgtatannnnnnnncttctagttttctacttttgcacttcgcattagttcttatattgcatttagatttagatttaaatgatatctc |
307 |
Q |
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| T |
38069603 |
ttatttataggtgtgtatattttttttcttctagttttctacttttgcacttcgcattagttcttatattgcatttagatttagatttaaatgatatctc |
38069504 |
T |
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| Q |
308 |
attaaatatggtataagatattataattttaattatttcatataactagatttttgctggtcatatatagagttgaatttaaacgtttgattgtgttttg |
407 |
Q |
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| T |
38069503 |
attaaatatggtataagatgttataattttaattatttcatataactagatttttgctggtcatatatagagttgaatttaaacgtttgattgtgttttg |
38069404 |
T |
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| Q |
408 |
cagaggagac |
417 |
Q |
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| T |
38069403 |
cagaggagac |
38069394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 31876084 - 31876192
Alignment:
| Q |
8 |
gagtgagatgaagctttgtgaggaatatacttgtgtgatctctcatggacctaatccaagaaccactcacatattcgataattgcgtcgtcgaagagagt |
107 |
Q |
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| T |
31876084 |
gagtgagatggaactttctgaagaatacacatgtgtgatatctcatggaccaaacccaaaaacaactcatatatttgataattgtgttgtggaagaaagt |
31876183 |
T |
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| Q |
108 |
tactgttct |
116 |
Q |
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| T |
31876184 |
tactgttct |
31876192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 31876223 - 31876292
Alignment:
| Q |
150 |
aattttcttagagtttgctacacttgcaagaaacatcttgagcagacaaaagatatatttatttataggt |
219 |
Q |
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| T |
31876223 |
aattttcttagcttttgttacacttgcaaaaatcatcttgagcatacaaaagacatcttcatttacaggt |
31876292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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