View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_18 (Length: 415)
Name: NF7727_low_18
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 3753867 - 3753489
Alignment:
| Q |
15 |
tatagagtagagtatttacaaagatatttataaatcatcaactaaaaacgttatcacattaacagtaaaaagttgactgtacaactttatggatgagtca |
114 |
Q |
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| T |
3753867 |
tatagagtagagtatttacaaagatatttataaatcgtcaactaaaaacgttatcacattaacagtaaaaagttgactgcacaactttatggatgagtca |
3753768 |
T |
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| Q |
115 |
acttcttaccaactaatctatcacactacactaatttgatctctattcatgagcacaaaaaccacattattatgcaccaattaacctcaaacggaatata |
214 |
Q |
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||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3753767 |
acttcttaccaactaattcatgacacta-----atttgatctctattcatgagctcaaaaaccacattattatgcaccaattaacctcaaacggaatata |
3753673 |
T |
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| Q |
215 |
tatgttatcagtttttgtctgcaacgtgcgtgaccctataactgtttcttaccttcaaagcaacacctccaatatgtaaacgcatactttgtactttcgc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3753672 |
tatgttatcagtttttgtctgcaacgtgcgtgaccctataactgtttcttaccttcaaagcaacacctccaatatgtaaacgcatactttgtactttcgc |
3753573 |
T |
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| Q |
315 |
agagttgagcagttcggtgtatttttatcaagaagtgtaaagtttagggaaaattttccttttactcatgttatcaagatatttt |
399 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3753572 |
agagttgag-agttcggtgtatttttatcaagaagtgtaaagtttagggaaaaatttccttttactcatgttatcaagatatttt |
3753489 |
T |
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