View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_22 (Length: 393)
Name: NF7727_low_22
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 49 - 385
Target Start/End: Complemental strand, 48288024 - 48287688
Alignment:
| Q |
49 |
attaaaacaaagtgaagaactataacattttctcaannnnnnnnnnnnnnagattggtgaaaggaaacaaaagccaacaatacatcctcaagaatgagac |
148 |
Q |
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| T |
48288024 |
attaaaacaaagtgaagaactataacattttctcaattttttatttttttagattggtgaaaggaaacaaaagccaacaatatatcctcaagaatgagac |
48287925 |
T |
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| Q |
149 |
ttccaaagtcactatcattttctagagggattgagtgattgatcctttcaacaatcacattagatctaatactaaataataatttgatactgtacacaac |
248 |
Q |
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| T |
48287924 |
ttccaaagtcactatcattttctagagggattgagtgattgatcctttcaacaatcacattagatctaatactaaataataatttgatactgtacacaac |
48287825 |
T |
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| Q |
249 |
ctattgaattatgtacatcctaaattcccaatacacatttgggagaaccaaagcagcaagttgaactgctgaagatgagacccttttctttttccaagca |
348 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48287824 |
ctatcgaattatgtacatcctaaattcccaatacacatttgggagaaccaaagcagcaagttgaactgctgaagatgagacccttttctttttccaagca |
48287725 |
T |
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| Q |
349 |
aataacatgtttcttcattttattcttccttcatctc |
385 |
Q |
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| T |
48287724 |
aataacatgtttcttcattttattcttccttcatctc |
48287688 |
T |
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