View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_23 (Length: 380)
Name: NF7727_low_23
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 33234486 - 33234123
Alignment:
| Q |
1 |
tgtattgaatgaaaaaatgagtgttgagtaataatatataaacaagagaactcatatacattatagatttactaaaatgacaaacctactctaatatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33234486 |
tgtattgaatgaaaaaatgagtgttgagtaataatatataaacgagagaactcgtatacacgatagatttactaaaatgacaaacctactctaatatcaa |
33234387 |
T |
|
| Q |
101 |
acatgcacttagctcaatataatgatcctcttgtaatttaagctcaatataatggtgcagagttggtaagccataaatatattatatgtatcattagtca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234386 |
acatgcacttagctcaatataatgatcctcgtgtaatttaagctcaatataatggtgcagagttggtaagccataaatatattatatgtatcattagtca |
33234287 |
T |
|
| Q |
201 |
aaacaaaatgcggatttgcctccataattaaggattcaattcaattgtatgcattagaattactactttggag--nnnnnnngagtttaatgcttcaagt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33234286 |
aaacaaaatgcggatttgcctccataattaaggattcaattcaattgtatgcattagaattactactttggagaaaaaaaaagagtttaatgcttcaagt |
33234187 |
T |
|
| Q |
299 |
acacgaaatttacatcatgataaccaaaagttatgaaaaaatccacctaattttttgtaacaat |
362 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234186 |
acacgagatttacatcatgataaccaaaagttatgaaaaaatccacctaattttttgtaacaat |
33234123 |
T |
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