View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7727_low_26 (Length: 351)
Name: NF7727_low_26
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 21 - 335
Target Start/End: Complemental strand, 29090508 - 29090200
Alignment:
| Q |
21 |
tgagctagctcatcttttgttattatcatgattttgcggagaaattttaaaataatacagtatatatgatgggataaagattccatgatgagtatattgc |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29090508 |
tgagctagctcatctttcgttattatcatgattttgcggagaaattttaaaataatacagtatatatgatgggataaagattccatgatgagtatattgc |
29090409 |
T |
|
| Q |
121 |
actcatcttccatggctgttttcttcctccaaggatgtcaattgtgccatggagaagagtgcaataaacttgttgtggaatctatcgacaagaactatgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29090408 |
actcatcttccatggctgttttcttcctccaaggatgtcaattgtgccatggagaagagtgcaataaacttgttgtggtatctatcgacaagaactatgt |
29090309 |
T |
|
| Q |
221 |
cagcgtccatggaggaagaatgcaacaagctcattatgaaatcaatcaacaataaccatatgattatgaatgagtatcctattaacattgatcttcgtat |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
29090308 |
cagcgtccatggaggaagaatgcaacaagctcattatgaaatccatcaacaataaccat------atgaatgagtatcctattaccattgatcttcatat |
29090215 |
T |
|
| Q |
321 |
acttcctctctttct |
335 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29090214 |
acttcctctctttct |
29090200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 14020001 - 14019950
Alignment:
| Q |
21 |
tgagctagctcatcttttgttattatcatgattttgcggagaaattttaaaa |
72 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
14020001 |
tgagctagctcagcttttgttgtaatcatgattttgcggagaaattttaaaa |
14019950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University