View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_27 (Length: 338)
Name: NF7727_low_27
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 51740140 - 51739814
Alignment:
| Q |
13 |
aatataccggaagtataaagttataaattgaataaccaagtttatgaatcaacgttctagcagtcttgccttctttaggaaatagcaatccaatnnnnnn |
112 |
Q |
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| T |
51740140 |
aatataccggaagtataaagttataaattgaataaccaagtttatgaatcaacgttctagcagttttgccttctttaggaaatagcaatccaataaaaaa |
51740041 |
T |
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| Q |
113 |
ncaatgaataatactattgtaattccatatttctataatcatcgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttt |
212 |
Q |
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| T |
51740040 |
acaatgaataatactattgtaattccatatttctataatcattgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttt |
51739941 |
T |
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| Q |
213 |
tggtttctatttcttgtatttaaccaaatggctaagtatctattcataagaaccacaaaacttgt-agaatgagacaacttaaaccctttgaagcttgtg |
311 |
Q |
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| T |
51739940 |
tggtttctatttcttgtatttaaccaaatggctaagtatctattcataagaaccacaaaacttgtaagaatgagacaacttaaaccctttgaagcttgtg |
51739841 |
T |
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| Q |
312 |
ctgcattatacttcttatcatccatct |
338 |
Q |
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| T |
51739840 |
ccgcattatacttcttatcatccatct |
51739814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 10200813 - 10200578
Alignment:
| Q |
15 |
tataccggaagtataaagttataaattgaataaccaagtttatgaatcaacgttctagcagtcttgccttctttaggaaatagcaatccaatnnnnnnnc |
114 |
Q |
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| T |
10200813 |
tatactggaaggacaaagttataaattgaataaccaagtttttgtagcaatgttctagctgttttaccttccttaggaaacaataatccaataatgaaac |
10200714 |
T |
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| Q |
115 |
aatgaataatactattgtaattccatatttctataatcatcgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttttg |
214 |
Q |
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| T |
10200713 |
aactaataatactattgtagccaaaaatttctataactattgagctagttagaagcaaaaaaagtattagtaatagttcagtagcttttaggtatttttg |
10200614 |
T |
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| Q |
215 |
gtttctatttcttgtatttaaccaaatggctaagta |
250 |
Q |
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| T |
10200613 |
gtttctatttcttgagtttaaccaaacggctaagta |
10200578 |
T |
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