View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7727_low_29 (Length: 336)
Name: NF7727_low_29
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 48593905 - 48593595
Alignment:
| Q |
19 |
aatatttagtcataaaattgtaggattagtttagttatctcaatatctaatatcacataatataactccgtacctccgttgacatttatagagaccctta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593905 |
aatatttagtcataaaattgtaggattagtttagttatctcaatatctagtatcacataatataactccgtacctccgttgacatttatagagaccctta |
48593806 |
T |
|
| Q |
119 |
tacttggt------attctttcaagaaagctataatttcttgttcttataccttgttattacattaataaagtaaggaatttccttatatttactgttta |
212 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48593805 |
tacttggtttgcatattctttcaagaaacctataatttcttgttcttataccttgttattacattaataaagtaaggaatttccttatatttacggttta |
48593706 |
T |
|
| Q |
213 |
tgcctttagtttatcttgttttgtttatgatggaatctagtgagtaggcaccctttgtcttggaattgtggaaagaagtcacaacgaatattccataaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593705 |
tgcctttagtttatcttgttttgtttatgatggaatctagtgagtaggcaccctttgtcttggaattgtggaaagaagtcacaacgaatattccataaat |
48593606 |
T |
|
| Q |
313 |
ctctgttctct |
323 |
Q |
| |
|
||||||||||| |
|
|
| T |
48593605 |
ctctgttctct |
48593595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University