View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_32 (Length: 325)
Name: NF7727_low_32
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 53048790 - 53049083
Alignment:
| Q |
17 |
cgtgttcgtgtgagaggaagatctccggccttcaatgcattggcagctactttcgagaactctaatgttagaaacctttcaaccccacctccaatgatta |
116 |
Q |
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| T |
53048790 |
cgtgttcgtgtgagaggaagatctccggccttcaatgcattggcagctactttcgagaactcaaatgttagaaacctttcaaccccacctccaatgatta |
53048889 |
T |
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| Q |
117 |
gaaaactgtacccaaaatctaagacaccagattcagcaacgctggcacctaaatcatcagccatatctcatcttacttctacttttgaaccaccatcagc |
216 |
Q |
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| T |
53048890 |
gaaaactgtacccaaaatctaagacaccagatttagcaacgctggcacctaaatcatcagccatatctcatcttacttctacttttgaaccaccatcagc |
53048989 |
T |
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| Q |
217 |
acgagaaaaattgattcctcggtcacttaaaggtatgagtagacgagttcattgtgattttattatatgttagaatttgttcttttgtaaaatg |
310 |
Q |
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| T |
53048990 |
acgagaaaaattgattcctcggtcacttaaaggtatgagtagacgagttcattgtgattttattatatgttagaatttgttcttttgtaaaatg |
53049083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 15957334 - 15957096
Alignment:
| Q |
16 |
tcgtgttcgtgtgagaggaagatctccggccttcaatgcattggcagctactttcgagaactctaatgttagaaacctttcaaccccacctccaatgatt |
115 |
Q |
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| T |
15957334 |
tcgtgttcgggtgaggggaaggtctccggcctttaatgcactagctgctactttcgagagccccggcggtaggaacctttcaactccacctccagtaata |
15957235 |
T |
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| Q |
116 |
agaaaactgtacccaaaatctaagacaccagattcagcaacgctggcacctaaatcatcagccatatctcatcttacttctacttttg---aaccaccat |
212 |
Q |
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| T |
15957234 |
agaaaactgtatccgaaatctacgactccagattctgcaatactagcatcaaaatctaaagccatagctgcacttacttctagttttgaacaaccacctt |
15957135 |
T |
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| Q |
213 |
cagcacgagaaaaattgattcctcggtcacttaaaggta |
251 |
Q |
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| T |
15957134 |
ctgcacgagaaactatgatacctcggtcagttaaaggta |
15957096 |
T |
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