View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7727_low_33 (Length: 324)

Name: NF7727_low_33
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7727_low_33
NF7727_low_33
[»] chr2 (20 HSPs)
chr2 (39-310)||(10474887-10475151)
chr2 (39-310)||(10489110-10489383)
chr2 (44-197)||(10493190-10493340)
chr2 (39-143)||(7478278-7478382)
chr2 (42-174)||(7481846-7481979)
chr2 (77-197)||(10507777-10507897)
chr2 (223-310)||(10507928-10508015)
chr2 (231-310)||(10493377-10493456)
chr2 (230-302)||(10545590-10545662)
chr2 (114-185)||(10463766-10463836)
chr2 (232-310)||(10849930-10850008)
chr2 (231-315)||(7481705-7481789)
chr2 (231-310)||(7478124-7478203)
chr2 (219-310)||(10463864-10463955)
chr2 (110-149)||(10545470-10545509)
chr2 (119-183)||(10863288-10863352)
chr2 (231-315)||(27968461-27968545)
chr2 (231-315)||(28092042-28092126)
chr2 (3-35)||(7478413-7478445)
chr2 (231-315)||(28102274-28102358)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 310
Target Start/End: Original strand, 10474887 - 10475151
Alignment:
Q  39 gacacgtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaa 138  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  10474887 gacatgtatgtgctatttttagttgagacacgtttaggatgctcaaacttcaacatcctcaacacttgaagacaatatgttgataaactatttatcaaaa 10474986  T
Q  139 caaaaacatatgagaaatctttggtcaatgtaaaaccaaataattagcatgcgaaactcagatgnnnnnnnnnnnnnnntacactgttagtcacacacct 238  Q
    |||||||||| || | |||| || | || |||||||||||||||||| |||| |||||  ||||                ||| |||   || |||||||    
T  10474987 caaaaacataggacacatctatgctaaacgtaaaaccaaataattagtatgcaaaactgcgatgaaaaaaagaaag----acattgt---tcccacacct 10475079  T
Q  239 caagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 310  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  10475080 caagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacag 10475151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 39 - 310
Target Start/End: Original strand, 10489110 - 10489383
Alignment:
Q  39 gacacgtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaa 138  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||||||||||    
T  10489110 gacatgtatgtgctttttttagttgagacacatttaggatgctcaaacttcaacatcctcaacactttaagacaatatgttgataaactatttgtcaaaa 10489209  T
Q  139 caaaaacatatgagaaatctttggtcaatgtaaaaccaaataattagcatgcgaaactcagatg-nnnnnnnnnnnnnnntacactgttagtc-acacac 236  Q
    |||||||||||  |||||||| | | |||||||| ||||||||||||||||| |||||| ||||                 ||| ||||| || ||||||    
T  10489210 caaaaacatatttgaaatcttcgctaaatgtaaagccaaataattagcatgccaaactccgatgaaaaaagaaaagaaaagacattgttactcaacacac 10489309  T
Q  237 ctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 310  Q
    || ||||||||||||||| || |||||||| |||  ||||||||| ||||||||||| ||||||||||||||||    
T  10489310 ctgaagatcagctgctgatataggcttgtcaccattgaaagcttcagcaagtttatcgtccacctcggacacag 10489383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 10493190 - 10493340
Alignment:
Q  44 gtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaacaaaa 143  Q
    ||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||   ||  || ||||||||||||||||||||||||||||||||||    
T  10493190 gtatgtgctttttttagttgagacacatttaggaagttcaaacttcaacatcctca---cttcaagacaatatgttgataaactatttgtcaaaacaaaa 10493286  T
Q  144 acatatgagaaatctttggtcaatgtaaaaccaaataattagcatgcgaaactc 197  Q
    |||| ||| ||||||||| | ||||||||||||||||||  |||||| ||||||    
T  10493287 acatctgataaatctttgctaaatgtaaaaccaaataatatgcatgcaaaactc 10493340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 7478382 - 7478278
Alignment:
Q  39 gacacgtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaa 138  Q
    |||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  7478382 gacatgtatgtgctgtttttagttgacacacatttaggatgctcaaacttcaacatcctcaacacttgaagacaatatgttgataaactatttgtcaaaa 7478283  T
Q  139 caaaa 143  Q
    |||||    
T  7478282 caaaa 7478278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 174
Target Start/End: Complemental strand, 7481979 - 7481846
Alignment:
Q  42 acgtatgtgctatttttagttgagacacatttaggatgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaaca- 140  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||   || |||||||||||||||| ||||||||||||||     
T  7481979 acgtatgtgctttttttagttgagacacatttaggaagctcaaacttcaacatcctcaacacgtcaagacaatatgttgataaattatttgtcaaaacaa 7481880  T
Q  141 aaaacatatgagaaatctttggtcaatgtaaaac 174  Q
    ||||||| ||| ||||||||| | |||| |||||    
T  7481879 aaaacatctgataaatctttgctaaatgcaaaac 7481846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 10507777 - 10507897
Alignment:
Q  77 atgctcaaacttaaacatcctcaacactcgaaaacaatatgttgataaactatttgtcaaaacaaaaacatatgagaaatctttggtcaatgtaaaacca 176  Q
    |||||||||||| ||||||||| ||||   || |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |    
T  10507777 atgctcaaacttcaacatcctctacacctcaagacaatatgttgataaactatttgttaaaacaaaaacatatgagaaatctttgctaaatgtaaaacaa 10507876  T
Q  177 aataattagcatgcgaaactc 197  Q
    ||||||||| |||| ||||||    
T  10507877 aataattagtatgcaaaactc 10507897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 10507928 - 10508015
Alignment:
Q  223 tgttagtcacacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 310  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||||||||||    
T  10507928 tgttactcacacacctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacag 10508015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 10493377 - 10493456
Alignment:
Q  231 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 310  Q
    |||||||||||||||||||||||||||||| ||||| |  |  |||||||| ||||||||||| ||||||||||||||||    
T  10493377 acacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacag 10493456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 10545590 - 10545662
Alignment:
Q  230 cacacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctc 302  Q
    ||||||||||||||||||||||||| |||||||||||||  |  |||||||| ||||||||||| || |||||    
T  10545590 cacacacctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctc 10545662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 10463766 - 10463836
Alignment:
Q  114 tatgttgataaactatttgtcaaaacaaaaacatatgagaaatctttggtcaatgtaaaaccaaataattag 185  Q
    ||||||||||||||||| ||||||||||||||||  || ||| ||||| | |||||||||||||||||||||    
T  10463766 tatgttgataaactattagtcaaaacaaaaacatgaga-aaaactttgctaaatgtaaaaccaaataattag 10463836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 10849930 - 10850008
Alignment:
Q  232 cacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 310  Q
    |||||||||||||||| |||||| ||||||||||| |  |  |||||||| ||||||||||| |||||||| |||||||    
T  10849930 cacacctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacag 10850008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 7481789 - 7481705
Alignment:
Q  231 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacaggttct 315  Q
    |||||||||||||||||| ||||||||||||||||| |  |  |||||||| ||||||||||| ||  |||||| ||||| ||||    
T  7481789 acacacctcaagatcagcggctgagatgggcttgtcactgctaaaagcttcagcaagtttatcgtcagcctcgggcacagtttct 7481705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 7478203 - 7478124
Alignment:
Q  231 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 310  Q
    ||||||||||||||||||| ||||| ||| |||||| |  |  |||||||| ||||||||||  ||||||||||||||||    
T  7478203 acacacctcaagatcagctactgagttggacttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacag 7478124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 10463864 - 10463955
Alignment:
Q  219 acactgttagtcacacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacag 310  Q
    |||||||||  ||||||||| ||||||||||||||| ||||||||| | |  |  ||||| || ||||||||||||||||| || |||||||    
T  10463864 acactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 10463955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 10545470 - 10545509
Alignment:
Q  110 acaatatgttgataaactatttgtcaaaacaaaaacatat 149  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  10545470 acaatatgttgataaactatttgtcaaaacaaaatcatat 10545509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 10863288 - 10863352
Alignment:
Q  119 tgataaactatttgtcaaaacaaaaacatatgagaaatctttggtcaatgtaaaaccaaataatt 183  Q
    ||||||||||||||||||||  | ||||||||| ||||||| | | ||| |||||||||||||||    
T  10863288 tgataaactatttgtcaaaagtagaacatatgacaaatcttcgctaaatataaaaccaaataatt 10863352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 27968461 - 27968545
Alignment:
Q  231 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacaggttct 315  Q
    ||||||||||||||||| |||||| |||||||| ||||  |  |||||||| |||||||| || |||||||  ||||||| ||||    
T  27968461 acacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 27968545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 28092126 - 28092042
Alignment:
Q  231 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacaggttct 315  Q
    ||||||||||||||||| |||||| |||||||| ||||  |  |||||||| |||||||| || |||||||  ||||||| ||||    
T  28092126 acacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28092042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 7478445 - 7478413
Alignment:
Q  3 ttcacatactatattgtggtatcttattcgaga 35  Q
    ||||||||||||||| |||||||||||||||||    
T  7478445 ttcacatactatattatggtatcttattcgaga 7478413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 28102358 - 28102274
Alignment:
Q  231 acacacctcaagatcagctgctgagatgggcttgtcgccaccgaaagcttctgcaagtttatcatccacctcggacacaggttct 315  Q
    ||||||||||||||||| |||||| |||||||| || |  |  |||||||| |||||||| || |||||||  ||||||| ||||    
T  28102358 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University