View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_39 (Length: 278)
Name: NF7727_low_39
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_39 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 18801484 - 18801729
Alignment:
| Q |
11 |
acacctaatatttttctcacttctcttcatcttcttcatcatcttaatccatcttccatgaacccagnnnnnnncttaagacccatgatcatgtccatgt |
110 |
Q |
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| T |
18801484 |
acacctaatatttttctcacttgtgtccatcttcttcatcatcttaatccatcttccatgaatccagaaaaaaacttaagaaccagaatcatgtccatgt |
18801583 |
T |
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| Q |
111 |
ataattaaataggtccacgcttctgaaataacatgaatcaaattgtcatgttgttaggtccacaattcatgaatcaaatcaaat-aaaaagtaacacttc |
209 |
Q |
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| T |
18801584 |
atgattaaataggtccacgcttctgaa----catgaatcaaatagtcatgttgttaggtccacaattcatgaatcaaataaaataaaaaagtaacacttc |
18801679 |
T |
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| Q |
210 |
agcaagctaattnnnnnnnctttcactaatcccaccacggcggtgacgaa |
259 |
Q |
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| T |
18801680 |
accaagctaattaaaaaaacttccactaatcccaccacggcggtgacgaa |
18801729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 19848684 - 19848618
Alignment:
| Q |
8 |
atgacacctaatatttttctcacttctcttcatcttcttcatcatcttaatccatcttccatgaacc |
74 |
Q |
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| T |
19848684 |
atgacacctaatatttttctcacttgtgtccatcttcttcatcatcttaatccatcttccatgaacc |
19848618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 21010345 - 21010305
Alignment:
| Q |
11 |
acacctaatatttttctcacttctcttcatcttcttcatca |
51 |
Q |
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| T |
21010345 |
acacctaatatttttctcacttttcttcatcttcttcatca |
21010305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 41655592 - 41655541
Alignment:
| Q |
169 |
tccacaattcatgaatcaaatcaaataaaaagtaacacttcagcaagctaatt |
221 |
Q |
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| T |
41655592 |
tccacaattcatgaatcaaat-aaaaaaaaagtaacacttcatcaaactaatt |
41655541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 11094793 - 11094829
Alignment:
| Q |
11 |
acacctaatatttttctcacttctcttcatcttcttc |
47 |
Q |
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| T |
11094793 |
acacctaatatttttctcacctttcttcatcttcttc |
11094829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 52742825 - 52742787
Alignment:
| Q |
9 |
tgacacctaatatttttctcacttctcttcatcttcttc |
47 |
Q |
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| T |
52742825 |
tgacacctaatatttttctcacctttcttcatcttcttc |
52742787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 56545 - 56509
Alignment:
| Q |
11 |
acacctaatatttttctcacttctcttcatcttcttc |
47 |
Q |
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| T |
56545 |
acacctaatatttttctcacctttcttcatcttcttc |
56509 |
T |
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