View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7727_low_41 (Length: 259)

Name: NF7727_low_41
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7727_low_41
NF7727_low_41
[»] chr3 (5 HSPs)
chr3 (130-244)||(10281973-10282089)
chr3 (56-87)||(38271536-38271567)
chr3 (52-85)||(22937024-22937057)
chr3 (52-85)||(30268245-30268278)
chr3 (50-106)||(10282334-10282390)
[»] chr8 (1 HSPs)
chr8 (51-100)||(8082857-8082906)
[»] chr2 (3 HSPs)
chr2 (52-102)||(33201191-33201241)
chr2 (56-102)||(27649468-27649514)
chr2 (51-96)||(32226497-32226542)
[»] chr1 (2 HSPs)
chr1 (52-102)||(31239017-31239067)
chr1 (52-89)||(24895924-24895961)
[»] chr5 (6 HSPs)
chr5 (52-85)||(17551933-17551966)
chr5 (52-85)||(28727966-28727999)
chr5 (52-85)||(34303558-34303591)
chr5 (52-85)||(35695231-35695264)
chr5 (55-99)||(3165548-3165592)
chr5 (52-84)||(29732193-29732225)
[»] chr4 (6 HSPs)
chr4 (51-84)||(5580480-5580513)
chr4 (52-88)||(28715471-28715507)
chr4 (52-90)||(47044902-47044940)
chr4 (52-85)||(6484700-6484733)
chr4 (49-97)||(657504-657552)
chr4 (52-80)||(44689755-44689783)
[»] chr7 (5 HSPs)
chr7 (51-86)||(16686355-16686390)
chr7 (51-86)||(17660591-17660626)
chr7 (52-90)||(17264184-17264222)
chr7 (52-85)||(14782070-14782103)
chr7 (52-85)||(15232103-15232136)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 10282089 - 10281973
Alignment:
Q  130 tttgatgtcgaagtcgattcatcattcttctccaacgtatctctctcctcta--aatcattccctctatctattttgcttttgaactcctggaaaattgc 227  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||    
T  10282089 tttgatgtcgaagtcgattcatcgttcttctccgacgtatctttctcctctataaatcattccctctatctattttgcttttaaactcttggaaaattgc 10281990  T
Q  228 aaagaagcaatcctttt 244  Q
    |||||| ||||||||||    
T  10281989 aaagaaccaatcctttt 10281973  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 38271536 - 38271567
Alignment:
Q  56 ttgtttaagggtataattgaaagtgaaaaaat 87  Q
    ||||||||||||||||||||||||||||||||    
T  38271536 ttgtttaagggtataattgaaagtgaaaaaat 38271567  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 22937024 - 22937057
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaa 85  Q
    |||||||||||||||||| |||||||||||||||    
T  22937024 aaatttgtttaagggtatgattgaaagtgaaaaa 22937057  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 30268278 - 30268245
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaa 85  Q
    ||||||||||||||||||||||||| ||||||||    
T  30268278 aaatttgtttaagggtataattgaaggtgaaaaa 30268245  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 10282390 - 10282334
Alignment:
Q  50 ataaatttgtttaagggtataattgaaagtgaaaaaatcatgccaaaatcatgaatt 106  Q
    |||||||||||||| |||||||| | |||| ||||| |||  |||||||||||||||    
T  10282390 ataaatttgtttaaaggtataatcggaagtaaaaaagtcagaccaaaatcatgaatt 10282334  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 8082857 - 8082906
Alignment:
Q  51 taaatttgtttaagggtataattgaaagtgaaaaaatcatgccaaaatca 100  Q
    |||||||||||| |||||||||||||||||||||| |||| |||||||||    
T  8082857 taaatttgtttatgggtataattgaaagtgaaaaagtcatcccaaaatca 8082906  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 33201241 - 33201191
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaaatcatgccaaaatcatg 102  Q
    ||||||||| |||| |||||||| ||||||||||||||| |||||||||||    
T  33201241 aaatttgttaaaggatataattggaagtgaaaaaatcattccaaaatcatg 33201191  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 27649514 - 27649468
Alignment:
Q  56 ttgtttaagggtataattgaaagtgaaaaaatcatgccaaaatcatg 102  Q
    ||||||||||||||||||||||||| |||| |||  |||||||||||    
T  27649514 ttgtttaagggtataattgaaagtgcaaaactcactccaaaatcatg 27649468  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 32226497 - 32226542
Alignment:
Q  51 taaatttgtttaagggtataattgaaagtgaaaaaatcatgccaaa 96  Q
    |||||||||| ||| |||||||||||||||||||| |||| |||||    
T  32226497 taaatttgttgaagtgtataattgaaagtgaaaaattcatcccaaa 32226542  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 31239067 - 31239017
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaaatcatgccaaaatcatg 102  Q
    |||||||||||||||||||||||||||||||||| |||  |||||| ||||    
T  31239067 aaatttgtttaagggtataattgaaagtgaaaaagtcagcccaaaaccatg 31239017  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 24895924 - 24895961
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaaatca 89  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  24895924 aaatttgtttaagggtatatttgaaattgaaaaaatca 24895961  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 17551966 - 17551933
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaa 85  Q
    ||||||||||||||||||||||||||||||||||    
T  17551966 aaatttgtttaagggtataattgaaagtgaaaaa 17551933  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 28727966 - 28727999
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaa 85  Q
    |||||||||||||||||||||||||||| |||||    
T  28727966 aaatttgtttaagggtataattgaaagttaaaaa 28727999  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 34303591 - 34303558
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaa 85  Q
    |||||| |||||||||||||||||||||||||||    
T  34303591 aaatttatttaagggtataattgaaagtgaaaaa 34303558  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 35695264 - 35695231
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaa 85  Q
    ||||||||||||||||||||||| ||||||||||    
T  35695264 aaatttgtttaagggtataattggaagtgaaaaa 35695231  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 3165592 - 3165548
Alignment:
Q  55 tttgtttaagggtataattgaaagtgaaaaaatcatgccaaaatc 99  Q
    ||||||||| ||||||||||||||||||||| |||| | ||||||    
T  3165592 tttgtttaaaggtataattgaaagtgaaaaagtcatcctaaaatc 3165548  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 29732193 - 29732225
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaa 84  Q
    |||||||||||||||| ||||||||||||||||    
T  29732193 aaatttgtttaagggtttaattgaaagtgaaaa 29732225  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 5580513 - 5580480
Alignment:
Q  51 taaatttgtttaagggtataattgaaagtgaaaa 84  Q
    ||||||||||||||||||||||||||||||||||    
T  5580513 taaatttgtttaagggtataattgaaagtgaaaa 5580480  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 28715471 - 28715507
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaaatc 88  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28715471 aaatttgtttaagggtatgattgaaagtgaaaaaatc 28715507  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 47044902 - 47044940
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaaatcat 90  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  47044902 aaatttgttcaagggtataattgaaagtgaaaaagtcat 47044940  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 6484733 - 6484700
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaa 85  Q
    ||||||||||||||||||||||| ||||||||||    
T  6484733 aaatttgtttaagggtataattggaagtgaaaaa 6484700  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 657552 - 657504
Alignment:
Q  49 gataaatttgtttaagggtataattgaaagtgaaaaaatcatgccaaaa 97  Q
    |||||||||||||||  |||||||| |||| |||||| |||||||||||    
T  657552 gataaatttgtttaaaagtataattaaaagcgaaaaagtcatgccaaaa 657504  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 44689783 - 44689755
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtg 80  Q
    |||||||||||||||||||||||||||||    
T  44689783 aaatttgtttaagggtataattgaaagtg 44689755  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 16686355 - 16686390
Alignment:
Q  51 taaatttgtttaagggtataattgaaagtgaaaaaa 86  Q
    |||||||||||||||||||||||| |||||||||||    
T  16686355 taaatttgtttaagggtataattggaagtgaaaaaa 16686390  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 17660591 - 17660626
Alignment:
Q  51 taaatttgtttaagggtataattgaaagtgaaaaaa 86  Q
    |||||||||||||||||||||||| |||||||||||    
T  17660591 taaatttgtttaagggtataattggaagtgaaaaaa 17660626  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 17264222 - 17264184
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaaatcat 90  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  17264222 aaatttgtttaaggctataattgaaagtgaaaaagtcat 17264184  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 14782070 - 14782103
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaa 85  Q
    ||||||||||||||||||||| ||||||||||||    
T  14782070 aaatttgtttaagggtataatagaaagtgaaaaa 14782103  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 15232103 - 15232136
Alignment:
Q  52 aaatttgtttaagggtataattgaaagtgaaaaa 85  Q
    ||||||||||||||||||||| ||||||||||||    
T  15232103 aaatttgtttaagggtataatagaaagtgaaaaa 15232136  T

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