View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7727_low_44 (Length: 242)

Name: NF7727_low_44
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7727_low_44
NF7727_low_44
[»] chr1 (3 HSPs)
chr1 (18-108)||(9798999-9799089)
chr1 (161-223)||(9799142-9799204)
chr1 (161-212)||(9790124-9790175)
[»] chr4 (2 HSPs)
chr4 (47-93)||(20246231-20246277)
chr4 (42-78)||(13985941-13985977)
[»] scaffold0014 (1 HSPs)
scaffold0014 (42-78)||(97940-97976)
[»] chr7 (1 HSPs)
chr7 (42-78)||(16254471-16254507)
[»] chr6 (1 HSPs)
chr6 (42-78)||(26129191-26129227)
[»] chr3 (2 HSPs)
chr3 (42-78)||(31197296-31197332)
chr3 (42-78)||(52770984-52771020)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 9798999 - 9799089
Alignment:
Q  18 aacgataaggaaccgagaagaaagcgatgcgcagcagtgctcaaaagagctttgataccatcatgaagttcatcatcttcttgatgatgat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9798999 aacgataaggaaccgagaagaaagcgatgcgcagcagtgctcaaaagagctctgataccatcatgaagttcatcatcttcttgatgatgat 9799089  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 9799142 - 9799204
Alignment:
Q  161 gtatattctgttattcaatgataagagttagttacaatatatgtttatataggggctatctaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9799142 gtatattctgttattcaatgataagagttagttacaatatatgtttatataggggctatctaa 9799204  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 9790124 - 9790175
Alignment:
Q  161 gtatattctgttattcaatgataagagttagttacaatatatgtttatatag 212  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  9790124 gtatattctgttattcaatgatgtgagttagttacaatatatgtttatatag 9790175  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 20246231 - 20246277
Alignment:
Q  47 cgcagcagtgctcaaaagagctttgataccatcatgaagttcatcat 93  Q
    |||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  20246231 cgcatcagagctcaaaagagatttgataccatcatgaagttcgtcat 20246277  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 13985977 - 13985941
Alignment:
Q  42 cgatgcgcagcagtgctcaaaagagctttgataccat 78  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  13985977 cgatgcgcagcagagctcaaaagagctctgataccat 13985941  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 97940 - 97976
Alignment:
Q  42 cgatgcgcagcagtgctcaaaagagctttgataccat 78  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  97940 cgatgcgcagcagagctcaaaagagctctgataccat 97976  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 16254507 - 16254471
Alignment:
Q  42 cgatgcgcagcagtgctcaaaagagctttgataccat 78  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  16254507 cgatgcgcagcagagctcaaaagagctctgataccat 16254471  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 26129227 - 26129191
Alignment:
Q  42 cgatgcgcagcagtgctcaaaagagctttgataccat 78  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  26129227 cgatgcgcagcagagctcaaaagagctctgataccat 26129191  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 31197296 - 31197332
Alignment:
Q  42 cgatgcgcagcagtgctcaaaagagctttgataccat 78  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  31197296 cgatgcgcagcagagctcaaaagagctctgataccat 31197332  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 52771020 - 52770984
Alignment:
Q  42 cgatgcgcagcagtgctcaaaagagctttgataccat 78  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  52771020 cgatgcgcagcagagctcaaaagagctctgataccat 52770984  T

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