View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_45 (Length: 240)
Name: NF7727_low_45
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 11311199 - 11310988
Alignment:
| Q |
15 |
actataggctacaagagagaaaaacaataatgggaaagagtaaggttctagttgtggggggtaccgggtatattgggaggagaatagtgaaggcaagttt |
114 |
Q |
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| T |
11311199 |
actaaaggctacaagagagaaaaacaataatgggaaagagtaaggttctagttgtggggggaactgggtatattgggaggagaatagtgaaggcaagttt |
11311100 |
T |
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| Q |
115 |
agaacaaggtcatgaaacctatgtacttcaacgtccagatatagggcttgaaactgagaaagtgcaaatgcttctttcattcaagaaactaggtgctcat |
214 |
Q |
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| T |
11311099 |
agaacaaggtcatgaaacctatgtacttcaacgtccagatatagggcttgaaactgagaaagtgcaaatgcttctttcattcaagaaactaggtgctcat |
11311000 |
T |
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| Q |
215 |
cttgtggaaggt |
226 |
Q |
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| T |
11310999 |
cttgtggaaggt |
11310988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 11345872 - 11345661
Alignment:
| Q |
15 |
actataggctacaagagagaaaaacaataatgggaaagagtaaggttctagttgtggggggtaccgggtatattgggaggagaatagtgaaggcaagttt |
114 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11345872 |
actataggctacaagagagaaaatcaataatgggaaagagtaaggttctagttgtggggggtactgggtatattgggaggagaatagtgaaggcaagttt |
11345773 |
T |
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| Q |
115 |
agaacaaggtcatgaaacctatgtacttcaacgtccagatatagggcttgaaactgagaaagtgcaaatgcttctttcattcaagaaactaggtgctcat |
214 |
Q |
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| T |
11345772 |
agaacaaggtcatgaaacctatgtacttcaacgtctagatatagggcttgaaactgagaaggtgcaaatgcttctttcatataagaaactaggtgctcat |
11345673 |
T |
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| Q |
215 |
cttgtggaaggt |
226 |
Q |
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| T |
11345672 |
cttgtggaaggt |
11345661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 30182633 - 30182457
Alignment:
| Q |
43 |
aatgggaaagagtaaggttctagttgtggggggtaccgggtatattgggaggagaatagtgaaggcaagtttagaacaaggtcatgaaacctatgtactt |
142 |
Q |
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||||| |||||| |||||| |||| ||||| || || || || || || || ||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
30182633 |
aatggaaaagagcaaggttttagtagtgggaggaacaggatacataggaagaagaatagtgaaggcaagtttagaacaaggacatgaaacctatgtgatt |
30182534 |
T |
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| Q |
143 |
caacgtccagatatagggcttgaaactgagaaagtgcaaatgcttctttcattcaagaaactaggtgctcatcttgt |
219 |
Q |
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| T |
30182533 |
caaaggccagagttgggacttcaaattgagaagcttcaaagacttctatcattcaagaaacaaggtgctcatattgt |
30182457 |
T |
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