View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_5 (Length: 609)
Name: NF7727_low_5
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 21 - 600
Target Start/End: Original strand, 36541047 - 36541634
Alignment:
| Q |
21 |
aaagcccagaatattcattgatacaaggatacaaaattatatacaagggcaaggcaatgctcatgcaaataatggagaattacnnnnnnnnnnnngatgt |
120 |
Q |
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| T |
36541047 |
aaagcccagaatattcattgatacaaggatacaaaattatatacaagggcaaggcaatgctcatgcaaagaatggagaattacatat--------gatgt |
36541138 |
T |
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| Q |
121 |
agaagatattgtttgtagcattgattattatatgtgcaagtaatatccaagttgtatcctacatgtagcaatcaatgagaaatacaatttgatcattgta |
220 |
Q |
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| T |
36541139 |
agaagatattgtttgtagcattgattattatacgtgcaagtaatatccaagttgtatcctacatgtagcaatcaatgagaaatacaatttgatcattgta |
36541238 |
T |
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| Q |
221 |
gttaagaatcatattatgaggaagagatggttcctttaatcaaaacctagttcatgaaaattagtgtaaattgaaaacaaattttcaaaacttagtcaac |
320 |
Q |
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| T |
36541239 |
gttaagaatcatattatgaggaagagatggttcctttaatcaaaacctagttcatgaaaattactgtaaattgaaaacaaattttcaaaacttagtcaac |
36541338 |
T |
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| Q |
321 |
aatagtcaattatctcaatcttgat---nnnnnnnnnnnttgaaatttgaagttcataattttcaaagtcactatgtgagtcattcgaccttttctcaaa |
417 |
Q |
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| T |
36541339 |
aatagtcaattatctcaatcttgatcaaaataaaaaaaattgaaatttgaagttcataattttcaaaatcactatgtgagtcattcgaccttttctcaaa |
36541438 |
T |
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| Q |
418 |
aacataagta-------------aataatcaattacaactacaaaaaatttagatccatgtatataaactacttacctatcaatggaaaaattagctgat |
504 |
Q |
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| T |
36541439 |
aacataagtaaattaccaattataataatcaattacaactacaaaaaatttagatccatgtatataaactacttacctatcaatggaaaaattagctgat |
36541538 |
T |
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| Q |
505 |
gataacgaaattccaactccgtgagactcatcatcatcgtctacatgaatattgcatccggtgaatccaaaagatacaatatctacgagttcatct |
600 |
Q |
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| T |
36541539 |
gataacgaaattccaactccgtgagactcatcatcatcgtctacatgaatattgcatccggtgaatccaaaagatacaatatctacgagttcatct |
36541634 |
T |
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