View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_56 (Length: 202)
Name: NF7727_low_56
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 43403532 - 43403361
Alignment:
| Q |
13 |
agaagaagaagaaagtttcatgataagcctaaaagtttggtaatgtaggttaaatcaagatttcacaccccacaagtcataaccctgaacattactatac |
112 |
Q |
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| T |
43403532 |
agaagaagaagaaagtttcatgataagcctaaaagtttggtaatgtaggttaaatcaagatttcacaccccacaagtcatagctctgaacattactatac |
43403433 |
T |
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| Q |
113 |
attgtctctgttaattgagttaaactcacgatgactaagtattaatagagacactttagggtgaggtaaagt |
184 |
Q |
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| T |
43403432 |
attgtctctattaattgagttaaactcacgatgactaagtattaatagagacactttagggtgaggtaaagt |
43403361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 41262692 - 41262626
Alignment:
| Q |
36 |
taagcctaaaagtttggtaatgtaggttaaatc-aagatttcacaccccacaagtcataaccctgaaca |
103 |
Q |
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| T |
41262692 |
taagcctaaaagtttggtaatgtag--taaatcaaagattccacacctcacaagtcatagctctgaaca |
41262626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 43404314 - 43404359
Alignment:
| Q |
105 |
tactatacattgtctctgttaattgagttaaactcacgatgactaa |
150 |
Q |
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| T |
43404314 |
tactatacattgtctctactaattgagttaaattcacgatgactaa |
43404359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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