View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_6 (Length: 602)
Name: NF7727_low_6
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 591
Target Start/End: Original strand, 36968629 - 36969199
Alignment:
| Q |
20 |
aatcgtttatcaaaacattagagcactcaaaataacatgataaagagcaactggacaactcaggacgatgaccaattgaattgtcatttcattacattta |
119 |
Q |
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| T |
36968629 |
aatcgcttatcaaaacattagagcactcaaaataacatgataaagagtaattggacaactcaggacgatgaccagttgaattgtcatttcattacattta |
36968728 |
T |
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| Q |
120 |
tttctctaaggcatataggacgatctacctgttgaaatatcatttcgttgcataaaactatacttaaaaatactaaacttttctttattactaaacaatt |
219 |
Q |
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| T |
36968729 |
tttctctaaggcatataggacgatctacatgttgaaatatcattttgttgcaaaaaactatacttaaaaatactaaacttttctttattactaaacaatt |
36968828 |
T |
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| Q |
220 |
gtattaattctattaac-nnnnnnnnnnnnggtattcattcattctttggcaagtgnnnnnnnatagtnnnnnnnngtgttttttctctgcaaattcaac |
318 |
Q |
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| T |
36968829 |
gtattaattctattagcaaaaaaataaaaaggtattcattcattctttgacaagtgtttttttatagtaaaaaaagtgtttttttctctgcaaattcaac |
36968928 |
T |
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| Q |
319 |
agtttatggatgcttaaccttcctcttcgaacatggcttagtgatctttcctcttaatcttgtttttgtcctgcaacattagactacttaagagatttga |
418 |
Q |
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| T |
36968929 |
agtttatggatgcttaaccttcctcttcgaatgtggcttagtgatctttcctcttaatcttgtttttgtcctgcaacattagactacttaagagatttga |
36969028 |
T |
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| Q |
419 |
gtctaattccnnnnnnnnnnnnaagaaagatttgagtctaattctaatggaaggaatgtggttgatgacaagtggtttgatatcgtattagtcaattgat |
518 |
Q |
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| T |
36969029 |
gtctaattcc--ttttttttttaagaaatatttgagtctaattctaatggaaggaatgtggttgatggcaagtggtttgatatcgtattagtcaattgat |
36969126 |
T |
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| Q |
519 |
caagaaaacgtcgaaagagaaaaaattaggagaaactgaaatcatcatgtatccacagttttatgtaatattc |
591 |
Q |
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| T |
36969127 |
caagaaaacgtcgaaagagaaaaaattaggagaaactgaaatcatcatgtatccacagttttatgtaatattc |
36969199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 36969705 - 36969774
Alignment:
| Q |
77 |
actcaggac-gatgaccaattgaattgtcatttcattacatttatttctctaaggcatataggacgatct |
145 |
Q |
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| T |
36969705 |
actcaggacagatgatcagttgaaatgtcatttcgttacatttatttctctaaagcctataggacgatct |
36969774 |
T |
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