View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7727_low_9 (Length: 567)
Name: NF7727_low_9
Description: NF7727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7727_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 24 - 553
Target Start/End: Complemental strand, 43552737 - 43552207
Alignment:
| Q |
24 |
catcctaaatataaacaatatatgcacattattgaatggtgactactcgtgactagaaacgctaggaaatttccctttcatattgcagcatat----tta |
119 |
Q |
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| T |
43552737 |
catcctaaatataaacaatatatgcacattattgaataatgact---cgtgactagaaacgctaggaaatttccctttcatattgcagcatatatattta |
43552641 |
T |
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| Q |
120 |
aacttctgctactattacatgaaaccttaaagcaagaaaaatggatttcaacagtaacatatatatgtgctgtagaaaaataatatgatataatgcacta |
219 |
Q |
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|| ||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
43552640 |
aatttctgcttctgttacatgaaaccttaaagcaagaaaaatggatttcaatagtaacatatatattggctgtagaaaaataatatgatataatgcatta |
43552541 |
T |
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| Q |
220 |
tatttcttggttgattttgacccttcttaattcttattatattttattggatgtaagaagatagtgggggctcccaatatttttatcagttctctgaatt |
319 |
Q |
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| T |
43552540 |
tacttcttagttgattttgacccttcttaattcttattatattttattggatgtaagaagatagtgggggctcccaatatttttatcagttctctgaatt |
43552441 |
T |
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| Q |
320 |
tagaaagctacaaaaatttgatagtgtatgtttgtttgagaggaagagagagatttagggaaatttgattttcgaaatgtgagatattggaggtggagga |
419 |
Q |
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| T |
43552440 |
tagaaaactacaaaaatttgatagtgtatgtttgtttgagaggaagagagagaattagggaaaattgattttctaaatgtgagatattggaggtggagga |
43552341 |
T |
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| Q |
420 |
caaaggtattattgtcaccttttccctgttcctatctaaatggattttattaatcaactttggcaacatgctcgtgtcttcctcaactagtccggttgtt |
519 |
Q |
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| T |
43552340 |
caaaggtattattgtcaccttttccctgtttctatctaaatggattttattaatcaactttggcaacatgctcgtgtcttcctcaactagtccggttgtt |
43552241 |
T |
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| Q |
520 |
acaagacaacatcataggttttttcaagtattat |
553 |
Q |
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| T |
43552240 |
acaagacaacatcataggttttttcaagtattat |
43552207 |
T |
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