View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7728_high_2 (Length: 500)

Name: NF7728_high_2
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7728_high_2
NF7728_high_2
[»] chr6 (10 HSPs)
chr6 (17-350)||(1897363-1897696)
chr6 (17-269)||(1902856-1903105)
chr6 (17-269)||(1907089-1907338)
chr6 (342-487)||(1897869-1898012)
chr6 (17-227)||(1912748-1912955)
chr6 (17-227)||(1886159-1886366)
chr6 (17-166)||(1879571-1879720)
chr6 (17-166)||(1891926-1892075)
chr6 (281-481)||(1903146-1903344)
chr6 (281-481)||(1907379-1907577)
[»] chr1 (1 HSPs)
chr1 (53-150)||(27039540-27039637)


Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 1897363 - 1897696
Alignment:
Q  17 agagtagaagtagtaatgctaaggtaatgggaagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctc 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1897363 agagtagaagtagtaatgccaaggtaatgggaagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctc 1897462  T
Q  117 atcgcttcatcaatcaattggctttctcaagtcagtagattcaagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcatta 216  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||    
T  1897463 atcacttcatcaatcaattggctttctcaagtcagtagattcaagttgggatgtcattgctggcattctcctgatagttgactattttctgtcttcacta 1897562  T
Q  217 tggtacattttcgtggtaagtagggtaggattaatattatgcaaaatgagagaaaatggaaatgattgacacagtcacgaacaccagacataatactgac 316  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1897563 tggtacattttagtggtaagtagggtaggattaatattatgcaaaatgagagaaaatggaaatgattgacacagtcacgaacaccagacataatactgac 1897662  T
Q  317 actagcacgtagacacgaatagtcatttgagaaa 350  Q
    ||||||||||||||||||||||||||||||||||    
T  1897663 actagcacgtagacacgaatagtcatttgagaaa 1897696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 1902856 - 1903105
Alignment:
Q  17 agagtagaagtagtaatgctaaggtaatgggaagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctc 116  Q
    ||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||| | |||||||||||||||||  | ||||||||||  ||    
T  1902856 agagtagaagtagcaatgcaaaggtagtaggaagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttc 1902955  T
Q  117 atcgcttcatcaatcaattggctttctcaagtcagtagattcaagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcatta 216  Q
    ||| ||||||||| ||  |||||||||||||||||| ||||||||||||   | |||||||||||||||||||||| ||||||||||||| |||||| ||    
T  1902956 atcacttcatcaaccagctggctttctcaagtcagtggattcaagttgg---gccattgctggcattctcctaatatttgactattttctgtcttcacta 1903052  T
Q  217 tggtacattttcgtggtaagtagggtaggattaatattatgcaaaatgagaga 269  Q
    |||||||||||  ||||| |||||||||| ||| |||||||||||||||||||    
T  1903053 tggtacattttactggtaggtagggtagggttagtattatgcaaaatgagaga 1903105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 1907089 - 1907338
Alignment:
Q  17 agagtagaagtagtaatgctaaggtaatgggaagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctc 116  Q
    ||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||| | |||||||||||||||||  | ||||||||||  ||    
T  1907089 agagtagaagtagcaatgcaaaggtagtaggaagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttc 1907188  T
Q  117 atcgcttcatcaatcaattggctttctcaagtcagtagattcaagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcatta 216  Q
    ||| ||||||||| ||  |||||||||||||||||| ||||||||||||   | |||||||||||||||||||||| ||||||||||||| |||||| ||    
T  1907189 atcacttcatcaaccagctggctttctcaagtcagtggattcaagttgg---gccattgctggcattctcctaatatttgactattttctgtcttcacta 1907285  T
Q  217 tggtacattttcgtggtaagtagggtaggattaatattatgcaaaatgagaga 269  Q
    |||||||||||  ||||| |||||||||| ||| |||||||||||||||||||    
T  1907286 tggtacattttactggtaggtagggtagggttagtattatgcaaaatgagaga 1907338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 342 - 487
Target Start/End: Original strand, 1897869 - 1898012
Alignment:
Q  342 tttgagaaaatggaaagg-ttgaatttaacatgcatgtctatgtccgacaccaacacgtgccagacatcgatacatgttggacactgaacaccacgtctt 440  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||| ||    
T  1897869 tttgagaaaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaa---cacgtttt 1897965  T
Q  441 caatatgaagtatcagtgctacatagtatttactagaatgtataatt 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1897966 caatatgaagtatcagtgctacatagtatttactagaatgtataatt 1898012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 1912748 - 1912955
Alignment:
Q  17 agagtagaagtagtaatgctaaggtaatgggaagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctc 116  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| |||    
T  1912748 agagtagaagcagtaatgctaaggtaattggaagcataatatcaatagcaggtgcttttgtgttgactttctacaaaggacaatccatcatgaattcctc 1912847  T
Q  117 atcgcttcatcaatcaattggctttctcaagtcagtagattcaagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcatta 216  Q
    ||| ||||||||| |||||| |||||||||||| || ||||||||||||   | ||||||||| ||||| || | | |||||||||||||   |||| ||    
T  1912848 atcacttcatcaaccaattgactttctcaagtctgtggattcaagttgg---gccattgctggtattctgctgacaattgactattttctggtttcacta 1912944  T
Q  217 tggtacatttt 227  Q
    |||||||||||    
T  1912945 tggtacatttt 1912955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 1886159 - 1886366
Alignment:
Q  17 agagtagaagtagtaatgctaaggtaatgggaagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctc 116  Q
    ||||||||||||||||||||||| || |||| |||||||| ||||||| ||| ||||||||||| ||||| |||||||||||| |||||||| ||| |||    
T  1886159 agagtagaagtagtaatgctaagatactggggagcataatctcaatagtaggagcttttgtgttgactttttacaaaggaccatccatcatgcattcctc 1886258  T
Q  117 atcgcttcatcaatcaattggctttctcaagtcagtagattcaagttgggatgtcattgctggcattctcctaatagttgactattttctatcttcatta 216  Q
    ||| ||||||||| |||||||||||||||||||||| ||||||||||||   ||||||||||||||||| |||| |||||| ||| || | | |||| ||    
T  1886259 atctcttcatcaaccaattggctttctcaagtcagttgattcaagttgg---gtcattgctggcattcttctaacagttgaatatcttatgttttcacta 1886355  T
Q  217 tggtacatttt 227  Q
    |||||||||||    
T  1886356 tggtacatttt 1886366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 1879571 - 1879720
Alignment:
Q  17 agagtagaagtagtaatgctaaggtaatgggaagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctc 116  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  ||    
T  1879571 agagtagaagtagtaatgctaaggtaattggaagcataatctcaatagcaggtgcttttgtgttgactttctacaaaggaccatccatcatgaattcatc 1879670  T
Q  117 atcgcttcatcaatcaattggctttctcaagtcagtagattcaagttggg 166  Q
     |  ||||||||| || ||| ||||||||||||||  |||||||||||||    
T  1879671 tttacttcatcaaccagttgactttctcaagtcagaggattcaagttggg 1879720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 1891926 - 1892075
Alignment:
Q  17 agagtagaagtagtaatgctaaggtaatgggaagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctc 116  Q
    ||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||| | |||||||||||||||||  | ||||||||||  ||    
T  1891926 agagtagaagtagcaatgcaaaggtagtaggaagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttc 1892025  T
Q  117 atcgcttcatcaatcaattggctttctcaagtcagtagattcaagttggg 166  Q
    ||| ||||||||| ||  ||||||||||| | |||| |||||||||||||    
T  1892026 atcacttcatcaaccagctggctttctcatggcagtggattcaagttggg 1892075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 281 - 481
Target Start/End: Original strand, 1903146 - 1903344
Alignment:
Q  281 attgacacagtcacgaacaccagacataatactgacactagcacgtagacacgaatagtcatttgagaaaatgg-aaaggttgaatttaacatgcatgtc 379  Q
    |||||||||||||||||||||| | |||| ||||||||||| || ||||||  |||| | ||||||  |||||| |||| ||| || |||||||||||||    
T  1903146 attgacacagtcacgaacaccatatataacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtc 1903245  T
Q  380 tatgtccgacaccaacacgtgccagacatcgatacatgttggacactgaacaccacgtcttcaatatgaagtatcagtgctacatagtatttactagaat 479  Q
    |||||| ||||||| ||||||||| |||   || | ||||| ||||||||   |||| ||||||| ||||||||| ||||| ||||||||||||||||||    
T  1903246 tatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaa---cacgccttcaatgtgaagtatcggtgctgcatagtatttactagaat 1903342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 281 - 481
Target Start/End: Original strand, 1907379 - 1907577
Alignment:
Q  281 attgacacagtcacgaacaccagacataatactgacactagcacgtagacacgaatagtcatttgagaaaatgg-aaaggttgaatttaacatgcatgtc 379  Q
    |||||||||||||||||||||| | |||| ||||||||||| || ||||||  |||| | ||||||  |||||| |||| ||| || |||||||||||||    
T  1907379 attgacacagtcacgaacaccatatataacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtc 1907478  T
Q  380 tatgtccgacaccaacacgtgccagacatcgatacatgttggacactgaacaccacgtcttcaatatgaagtatcagtgctacatagtatttactagaat 479  Q
    |||||| ||||||| ||||||||| |||   || | ||||| ||||||||   |||| ||||||| ||||||||| ||||| ||||||||||||||||||    
T  1907479 tatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaa---cacgccttcaatgtgaagtatcggtgctgcatagtatttactagaat 1907575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 27039637 - 27039540
Alignment:
Q  53 taatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcgcttcatcaatcaattggctttctcaagtca 150  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  27039637 taatctcaatagcaggtgcttttgtgttgactttctacaaaggaccatccatcatgaattcctcatcacttcatcaaccaattggctttctcaagtca 27039540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University