View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7728_high_3 (Length: 371)
Name: NF7728_high_3
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7728_high_3 |
 | |
|
| [»] scaffold0086 (2 HSPs) |
| | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0086 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 189 - 358
Target Start/End: Original strand, 41201 - 41371
Alignment:
| Q |
189 |
gaagacctgcaaaa-caaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaacccttccaagat |
287 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41201 |
gaagacctgcaaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacccttccaagat |
41300 |
T |
|
| Q |
288 |
ttaacagaccctttccgacaagccgaggattcagaactgacaagagattagtcaatgacaggtagtgtaaa |
358 |
Q |
| |
|
||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41301 |
ataacagaccctgcccgacaagccaaagattcagaactgacaagagattagtcaatgacaggtagtgtaaa |
41371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 189 - 358
Target Start/End: Original strand, 37424 - 37594
Alignment:
| Q |
189 |
gaagacctgcaaaa-caaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaacccttccaagat |
287 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
37424 |
gaagacctgcaaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactgtcctcaaggactttccgcgtgtaaaacgctaacccttccaagat |
37523 |
T |
|
| Q |
288 |
ttaacagaccctttccgacaagccgaggattcagaactgacaagagattagtcaatgacaggtagtgtaaa |
358 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37524 |
ataacaaacccttcccggcaagccgaggattcagaactgacaagagattagtcaatgacaggtagtgtaaa |
37594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 180 - 335
Target Start/End: Complemental strand, 44317151 - 44316996
Alignment:
| Q |
180 |
aaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaaccct |
279 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
44317151 |
aaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaaccct |
44317052 |
T |
|
| Q |
280 |
tccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat |
335 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
44317051 |
tccaagatataacagacccttcccggcaagccgaggattcagaactgacaagagat |
44316996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 9339246 - 9339397
Alignment:
| Q |
179 |
aaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaaccc |
278 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| || |||| |||||||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
9339246 |
aaaatgctacgaagacctgcaaaacaaaatcaataagaaag------gatgtgcggaacgcacattcctcaaagattttccgcgtgtaaaacgctaaccc |
9339339 |
T |
|
| Q |
279 |
ttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagatt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9339340 |
ttccaagatttaacagaccctttccgacaaatcgaggattcagaactgacaagagatt |
9339397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 180 - 335
Target Start/End: Complemental strand, 44313339 - 44313191
Alignment:
| Q |
180 |
aaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaaccct |
279 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
44313339 |
aaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaaccc- |
44313241 |
T |
|
| Q |
280 |
tccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat |
335 |
Q |
| |
|
|| ||| |||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
44313240 |
------atataatagacccttcccggcaagccgaggattcagaactgacaagagat |
44313191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 180 - 335
Target Start/End: Original strand, 34099553 - 34099708
Alignment:
| Q |
180 |
aaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaaccct |
279 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34099553 |
aaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaaccct |
34099652 |
T |
|
| Q |
280 |
tccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat |
335 |
Q |
| |
|
|||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
34099653 |
tccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat |
34099708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 178 - 335
Target Start/End: Original strand, 34095917 - 34096074
Alignment:
| Q |
178 |
taaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaacc |
277 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
34095917 |
taaaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctggacgcactgtcctcaaggattttccgcgtgtaaaacgctaacc |
34096016 |
T |
|
| Q |
278 |
cttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat |
335 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
34096017 |
cttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat |
34096074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 168 - 335
Target Start/End: Original strand, 21610701 - 21610868
Alignment:
| Q |
168 |
aactgctgtgtaaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtga |
267 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |
|
|
| T |
21610701 |
aactgttgtataaaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctggacgcactgtcctcaaggattttccgcgtgtaa |
21610800 |
T |
|
| Q |
268 |
aacgctaacccttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat |
335 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
21610801 |
aacgctaacccttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat |
21610868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 300
Target Start/End: Complemental strand, 19429966 - 19429862
Alignment:
| Q |
193 |
acctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaacccttccaagatttaac |
292 |
Q |
| |
|
|||||||||||||||| ||| | |||| | ||||||||||||| | | || |||||||||||||||||||||| || |||||||| ||| ||||||| |
|
|
| T |
19429966 |
acctgcaaaacaaaattaatgaaaaagtt-tgagacgtgctgatcacgctgtcctcaaggattttccgcgtgtagaatgctaaccc--ccagtatttaac |
19429870 |
T |
|
| Q |
293 |
agaccctt |
300 |
Q |
| |
|
|||||||| |
|
|
| T |
19429869 |
agaccctt |
19429862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 178 - 335
Target Start/End: Complemental strand, 29620 - 29463
Alignment:
| Q |
178 |
taaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaacc |
277 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
29620 |
taaaatgctacgaagacctgcaaaacaagatcaataagaaagatctgagacgtgctggacgcactgtcctcaaggattttccgcgtgtaaaacgctaacc |
29521 |
T |
|
| Q |
278 |
cttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat |
335 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
29520 |
cttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat |
29463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 22067610 - 22067767
Alignment:
| Q |
179 |
aaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaaccc |
278 |
Q |
| |
|
||||||||| |||||||| | |||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
22067610 |
aaaatgctacgaagacctcctaaacaaaaataatgagaaagatctgagacgtgctgaatgcactgtcctcaaggattttccgcgtgtaaaacgctaaccc |
22067709 |
T |
|
| Q |
279 |
ttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagatt |
336 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
22067710 |
ttccaagatttaacagacccttcccgacaagccgaagattcagaactgacaagagatt |
22067767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 4673360 - 4673500
Alignment:
| Q |
195 |
ctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaacccttccaagatttaacag |
294 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
4673360 |
ctgcaaaacaaaaacaatgagatagatctgagacgtgctgaacgtactgtcctcaaggattttccgcatgt-aaacgctaacctttccaagatttaacag |
4673458 |
T |
|
| Q |
295 |
accctttccgacaagccgaggattcagaactgacaagagatt |
336 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| |||| ||||| |
|
|
| T |
4673459 |
accctttccgataagccgaagattcagaactcacaaaagatt |
4673500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 22068278 - 22068151
Alignment:
| Q |
183 |
tgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaacccttcc |
282 |
Q |
| |
|
||||| ||||||||||||||||||| |||| ||| |||||||||||||| |||||||||| |||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
22068278 |
tgctacgaagacctgcaaaacaaaaacaatgagatagatctgagacgtgttgaacgcactgtcctcaaggatttttcgcgtgtaaaacgctaaccctttc |
22068179 |
T |
|
| Q |
283 |
aagatttaacagaccctttccgacaagc |
310 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
22068178 |
aagatttaacagacccttcccgacaagc |
22068151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 179 - 335
Target Start/End: Original strand, 21144115 - 21144271
Alignment:
| Q |
179 |
aaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaaccc |
278 |
Q |
| |
|
||||||||| ||||||||||||||||||| || | ||| |||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
21144115 |
aaaatgctacgaagacctgcaaaacaaaaacagtgagatagatctgagacgtgttgaacgcactgtcctcaaggattttccgcgtgtagaacgctaaccc |
21144214 |
T |
|
| Q |
279 |
ttccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat |
335 |
Q |
| |
|
|||||| || |||||||||||| || || ||| |||||||| |||||||||||||| |
|
|
| T |
21144215 |
ttccaaaatataacagacccttctcggcatgcctaggattcaaaactgacaagagat |
21144271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 335
Target Start/End: Complemental strand, 21145540 - 21145389
Alignment:
| Q |
180 |
aaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaaccct |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||| | | ||| |||||||||||||| || |||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
21145540 |
aaatgctacgaagacctgcaaaacaaaaactttgagatagatctgagacgtgttg----cactgtcctcaaggattttccgcgtgtagaacactaaccct |
21145445 |
T |
|
| Q |
280 |
tccaagatttaacagaccctttccgacaagccgaggattcagaactgacaagagat |
335 |
Q |
| |
|
||||||| |||||||||||| | | |||||||||||||||||||||| |||||| |
|
|
| T |
21145444 |
cccaagatataacagacccttcctggaaagccgaggattcagaactgacgagagat |
21145389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 4167731 - 4167875
Alignment:
| Q |
179 |
aaaatgctatgaagacctgcaaaacaaaatcaataagaaagatctgagacgtgctgaacgcactatcctcaaggattttccgcgtgtgaaacgctaaccc |
278 |
Q |
| |
|
||||||||| |||||||||||||||||| | | | || ||||||||||||||||| |||||| ||||||| |||||||||| | | |||||||| || |
|
|
| T |
4167731 |
aaaatgctacaaagacctgcaaaacaaaaatagtga-aatgatctgagacgtgctgatcgcactgtcctcaaagattttccgcatatagaacgctaatcc |
4167829 |
T |
|
| Q |
279 |
ttccaagatttaacagaccctttccgacaagccgaggattcagaact |
325 |
Q |
| |
|
||| || ||||||||||||| || ||||| ||| ||||||||||| |
|
|
| T |
4167830 |
-cccaggagttaacagacccttcccaacaagtcgaagattcagaact |
4167875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 30042712 - 30042819
Alignment:
| Q |
13 |
atgtgtaattaaaaggataataccttgtatgaaaatatggatgatggaaaatgcaacaagacaaagcacatgatcgaagaaggcaatggaactagcataa |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |||| ||| | | |
|
|
| T |
30042712 |
atgtgtaattaaaaggattataccttgtatgaaaatatagatgatggaaattgcaacaagacaaagcacatgatcg-agaaggcaaaggaatcagcgtca |
30042810 |
T |
|
| Q |
113 |
tctttatct |
121 |
Q |
| |
|
||||||||| |
|
|
| T |
30042811 |
tctttatct |
30042819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 6686533 - 6686491
Alignment:
| Q |
221 |
tctgagacgtgctgaacgcactatcctcaaggattttccgcgt |
263 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
6686533 |
tctgagacgtgctgatcgcactgtccttaaggattttccgcgt |
6686491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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