View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7728_high_4 (Length: 366)
Name: NF7728_high_4
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7728_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 18220385 - 18220051
Alignment:
| Q |
17 |
aggaattgggtgttcaagatccttactggactcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttacgagtcatgaactcagaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18220385 |
aggaattgggtgttcaagatccttactggactcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttactagtcatgaactcagaga |
18220286 |
T |
|
| Q |
117 |
gataaaggaggaaataattaagttgaaaaggtattgccaatttcannnnnnnnnnnnnnnnnatgatcgaatgaccagtgttattggttattctattgat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
18220285 |
gataaaggaggaaataattaagttgaaaaggtattgccaatttcattttttattttatttttatgattgaatggccagtgttattggttattctattgat |
18220186 |
T |
|
| Q |
217 |
tgagttattgcttacttttcttgatctgcaaacagagaaatgagggagctcacatcaaaaagagaagaggaagcattggctcttgtgactactcctagtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18220185 |
tgagttattgcttacttttcttgatctgcaaacagagaaatgagggagctcacatcaaaaagagaagaggaagcattggctcttgtgactactcctagtt |
18220086 |
T |
|
| Q |
317 |
cttgtatgtcaagtttgaattttgaggaccatggt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18220085 |
cttgtatgtcaagtttgaattttgaggactatggt |
18220051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 275
Target Start/End: Complemental strand, 43012151 - 43011907
Alignment:
| Q |
30 |
tcaagatccttactggactcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttacgagtcatgaactcagagag---ataaaggag |
126 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
43012151 |
tcaagacccctactggactcctccccctggctggaagcctggagacagcattgcaccagaatatgttactagtaatgaactcagagagatcataaaggag |
43012052 |
T |
|
| Q |
127 |
gaaataattaagttgaaaaggtattgccaatttcannnnnnnnnnnnnnnnnatgatcgaatgaccagtgttattggttattctattga--ttgagttat |
224 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| ||||| ||||||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
43012051 |
gaaataattaagttgaaacggtattgccagtttca------ttttccattttatgattgaatgactggtgttattggttattctattgattttgatttat |
43011958 |
T |
|
| Q |
225 |
tgcttacttttcttgatctgcaaacagagaaatgagggagctcacatcaaa |
275 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
43011957 |
cacatacttttcttgatctgcaaacagtgaaatgagggagctaaaatcaaa |
43011907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University