View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7728_high_5 (Length: 335)

Name: NF7728_high_5
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7728_high_5
NF7728_high_5
[»] chr4 (1 HSPs)
chr4 (19-317)||(41333440-41333738)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 41333440 - 41333738
Alignment:
Q  19 ctcgtttcccttactgaatgattcacgacgataacaagcaaggacactacataccttctagtcaagaatgtgttacattaattttattttgtgtaacata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41333440 ctcgtttcccttactgaatgattcacgacgataacaagcaaggacactacataccttctagtcaagaatgtgttacattaattttattttgtgtaacata 41333539  T
Q  119 aatccctgtttgtattaaattcaatgtctatataaataactaattcaattttattttgggctatattaattggaagacacgaccaaagggcaaaggtgga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41333540 aatccctgtttgtattaaattcaatgtctatataaataactaattcaattttattttgggctatattaattggaagacacgaccaaagggcaaaggtgga 41333639  T
Q  219 gtactgcccaacccatcaacatatatttgattatttatttgatacaatatttcatgaaattgttttttcttatccaatgttgaagaggtagggagcatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41333640 gtactgcccaacccatcaacatatatttgattatttatttgatacaatatttcatgaaattgttttttcttatccaatgttgaagaggtagggagcatg 41333738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University