View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7728_high_8 (Length: 283)
Name: NF7728_high_8
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7728_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 3531704 - 3531951
Alignment:
| Q |
1 |
caccaaaagcttcaaataaaccaggagtgtagacaagttgacagaaacatgtttcttgggttgcatcaaaaacatctttaatggcagtgcagcatatgtc |
100 |
Q |
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| T |
3531704 |
caccaaaagcttcaaataaaccaggagtgtagacaagttgacagaaacatgtttcttgggttgcatcaaaaacatctttaatggcagtgcagcatatgtc |
3531803 |
T |
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| Q |
101 |
tggtggataaatgtcttgtatcgaatgactagtggagttagcgtactcaatgcatggcaataacggtttaccgcacggtggaagaacttgtgcatctaat |
200 |
Q |
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| T |
3531804 |
tggtggataaatgtcttgtatcgaatgactagtggagttagcgtactcaatgcatggcaataacggtttaccgcacggtggaagaacttgtgcatctaat |
3531903 |
T |
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| Q |
201 |
atgctaatcacactcatgctaattaccatcaacagcataacatacatt |
248 |
Q |
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| T |
3531904 |
atgctaatcacactcatgctaattaccatcaacagcataacatacatt |
3531951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 3531960 - 3531998
Alignment:
| Q |
242 |
atacattttgttgtaattcatgagactacggaccttaat |
280 |
Q |
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| T |
3531960 |
atacattttgttgtaattcatgagactacggaccttaat |
3531998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 3527470 - 3527519
Alignment:
| Q |
177 |
ggtggaagaacttgtgcatctaatatgctaatcacactcatgctaattac |
226 |
Q |
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| T |
3527470 |
ggtggaagcacttgtgcatctactaagctaattacactcatgctaattac |
3527519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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