View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7728_low_1 (Length: 1047)
Name: NF7728_low_1
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7728_low_1 |
 | |
|
| [»] scaffold0393 (1 HSPs) |
| | |
|
| [»] scaffold0899 (1 HSPs) |
| | |
|
| [»] scaffold0971 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 449 - 1030
Target Start/End: Complemental strand, 37561873 - 37561300
Alignment:
| Q |
449 |
gtgtgtgtttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaatgtgagttgaattatgattggatacattcacataacaaaa |
548 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37561873 |
gtgtttgtttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaatgtgagttg--------ttggatacattcacataacaaaa |
37561782 |
T |
|
| Q |
549 |
gttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctac |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37561781 |
gttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaaggtacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctac |
37561682 |
T |
|
| Q |
649 |
ttgaggaattcaaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatacacaaagtgtagcttttggc |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37561681 |
ttgaggaattcaaacatgtcaaaatcaattttacacctctagaatcaattccgcctcatccaaaattgaaaccaaacatacacaaagtgtagcttttggc |
37561582 |
T |
|
| Q |
749 |
aaaatcatggtggctcaccgtgattctgccggacacactgtgattcccaaacatatactatcagactaaccttgattccaaacatacactaaagcttgta |
848 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37561581 |
aaaatcatggtggctcaccgtgattccgccggacacactgtgattcccaaacatatactatcagactaaccttgattccaaacatacactaaagcttgta |
37561482 |
T |
|
| Q |
849 |
gctagcaatgcatatttttagttagattaagatggtgaacaaactcagtaaattgtttggagtgcaagattgaaattacatttcacaatagttacatggt |
948 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37561481 |
gctagcaatgcatatttttagttagattaagatggtcaacaaactcagtaaattgtttggagtgcaagattgaaattacatttcacaatagttacatggt |
37561382 |
T |
|
| Q |
949 |
aaattatagtagactagacaaaataacataatcaaactcataacaacaattttgctaaattcatataagtctatttcaatat |
1030 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
37561381 |
aaattatagtagactagacaaaataacataatcaaactcataacaacaattttgttgaattcatataagtctatttcaatat |
37561300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 563 - 642
Target Start/End: Complemental strand, 29823569 - 29823490
Alignment:
| Q |
563 |
ttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
29823569 |
ttgagtgtagaaatcacatttggggtcaaaagctacaaatcttagattcaagtttgaatcaattttagaggcaaaatcaa |
29823490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 616 - 698
Target Start/End: Original strand, 37420274 - 37420357
Alignment:
| Q |
616 |
tagaatcaattatagaggcaaaatcaaatctacttgagg-aattcaaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| ||| || |||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
37420274 |
tagaatcaattctagaggcaaaatcaattctactctagggaagccaaacatgtcaaaatcaattctacacctctagaatcaatt |
37420357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 548 - 686
Target Start/End: Original strand, 33502858 - 33502997
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatcta |
647 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||| | | |||||| || |||| ||| |||||||||||||||||| | || ||||||||| | || |
|
|
| T |
33502858 |
agttgaacaataaattttagtgtaataatcacatctagactcaaaaacttgaaattctagcttcaagttagaatcaattctggatgcaaaatcagtttta |
33502957 |
T |
|
| Q |
648 |
cttgag-gaattcaaacatgtcaaaatcaattttacacct |
686 |
Q |
| |
|
|| ||| | | |||||||||||||||||||||||||||| |
|
|
| T |
33502958 |
ctcgagagcaaccaaacatgtcaaaatcaattttacacct |
33502997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 548 - 698
Target Start/End: Complemental strand, 44439329 - 44439175
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaa---ttatagaggcaaaatcaaat |
644 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| | ||||||||| ||||| ||| |||||||||||||||| || ||||||||||||||| | |
|
|
| T |
44439329 |
agttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattcttctagaggcaaaatcaatt |
44439230 |
T |
|
| Q |
645 |
ctacttga-ggaattcaaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
| || || || | ||||||||||||||| |||| |||||| | ||||||||| |
|
|
| T |
44439229 |
ttcctggagggcaaccaaacatgtcaaaattaattcaacacctttagaatcaatt |
44439175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 733 - 776
Target Start/End: Original strand, 3208293 - 3208336
Alignment:
| Q |
733 |
aagtgtagcttttggcaaaatcatggtggctcaccgtgattctg |
776 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3208293 |
aagtgtagcttttgtcaaaatcaaggtggctcaccgtgattctg |
3208336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 588 - 639
Target Start/End: Complemental strand, 43074011 - 43073960
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaat |
639 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| || ||||||||| |
|
|
| T |
43074011 |
tcaaaagctacaaatcttagtttcaagttaaaatcaattctataggcaaaat |
43073960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 569 - 626
Target Start/End: Complemental strand, 28028896 - 28028839
Alignment:
| Q |
569 |
gtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| ||||||||| | |||||| |
|
|
| T |
28028896 |
gtaaaaatcacatttgtagtcaaaagctacaaattctagcttcaagttatagtcaatt |
28028839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 29968909 - 29968977
Alignment:
| Q |
451 |
gtgtgtttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaatgtgagttgaat |
520 |
Q |
| |
|
||||||||| |||| |||| ||||||| ||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
29968909 |
gtgtgtttgattcttgagtgacaaaaact-gattttgaatgaattgattttagttaaaagtgagttgaat |
29968977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 37402256 - 37402321
Alignment:
| Q |
561 |
atttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
37402256 |
atttaagtgtaacaatcatgtttgaagtcaaaagctacaaattctagcttcaagttagagtcaatt |
37402321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 659 - 731
Target Start/End: Complemental strand, 7629826 - 7629754
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatacac |
731 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||| | ||| ||||||| || |||||||||||||| |
|
|
| T |
7629826 |
caaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacac |
7629754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 547 - 603
Target Start/End: Complemental strand, 13246815 - 13246759
Alignment:
| Q |
547 |
aagttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatc |
603 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||| | ||||||| |||||||| |
|
|
| T |
13246815 |
aagttgatcaataaatttgagtgtaaaaatcacgtttggaatcaaaaggtacaaatc |
13246759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 698
Target Start/End: Original strand, 1976942 - 1977025
Alignment:
| Q |
616 |
tagaatcaattatagaggcaaaatcaaatctacttg-aggaattcaaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
||||||||||| | ||| ||||||||| ||||||| | ||| ||||||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
1976942 |
tagaatcaattttggagacaaaatcaattctacttttaagaaagcaaacatgtcaaaatcaatttcaaacctctagaatcaatt |
1977025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 687
Target Start/End: Complemental strand, 7630168 - 7630096
Alignment:
| Q |
615 |
ttagaatcaattatagaggcaaaatcaaatctactt--gaggaattcaaacatgtcaaaatcaattttacacctc |
687 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
7630168 |
ttagaatcaattatggaggcaaaaccaattctactctagaggaat-caaa-atgtcaaaatcaattttacacctc |
7630096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 641
Target Start/End: Complemental strand, 29823711 - 29823620
Alignment:
| Q |
550 |
ttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatca |
641 |
Q |
| |
|
||||||||| | |||| |||||| ||| | ||||| |||||||||||| ||| ||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
29823711 |
ttgaacaatgaacttgaatgtaaatatcgcttttgatttcaaaagctacacatcatagattcaagtctgaatcaattttagaggcaaaatca |
29823620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 642
Target Start/End: Complemental strand, 32827589 - 32827494
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagc-tacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
|||||||||||| |||||| | | |||||||| |||| | |||||||| || ||||| ||| ||||||||| || ||||| |||| |||||||||| |
|
|
| T |
32827589 |
agttgaacaatatatttgattatgaaaatcacgtttggaatcaaaagcttaaaaatcctagcttcaagttataaccaattttagaagcaaaatcaa |
32827494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 624
Target Start/End: Complemental strand, 44810437 - 44810374
Alignment:
| Q |
561 |
atttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaa |
624 |
Q |
| |
|
|||||| ||| ||||||| |||| ||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
44810437 |
atttgaatgttaaaatcatgtttgccgtcaaaagctacaaatcctagcttcaagttagaatcaa |
44810374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 548 - 633
Target Start/End: Complemental strand, 42741052 - 42740968
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagagg |
633 |
Q |
| |
|
||||| ||| || |||||||||||||||||| | | | |||||||||||||||| ||| |||||| ||||||||||||| |||| |
|
|
| T |
42741052 |
agttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaag-tagaatcaattatggagg |
42740968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 1e-68; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 165 - 414
Target Start/End: Complemental strand, 37602897 - 37602653
Alignment:
| Q |
165 |
atagaacatgaaagcaatggagatctttccatcttcttatgcaaagcaacgaagatttttccatcttctattatatggaaattacggtggacacagtgaa |
264 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||| |||| |||||||| |||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
37602897 |
atagaacatgaaagcgatggagatatttccttcttcatatgtaaagcaacaaagatttttca----tctattatatgaaaattattgtggacacagtgaa |
37602802 |
T |
|
| Q |
265 |
aagcaatggagatctttcaatctttagaatggccctaactaagttaacacaataattatatccttagtagttaaagagttagtgaatgtgctctagcaac |
364 |
Q |
| |
|
| ||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
37602801 |
caacaatggagatctttccatctttataatggccctaacacagt-aacacaataattagatccttagtagttaaggagttagtaaatgtgctttagcaac |
37602703 |
T |
|
| Q |
365 |
aaagttgtgaattatctatggaaaaaagatggctttacaaagggatcaaa |
414 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
37602702 |
aaagttgtgagttatctatggaaagaagatggcttgacaaagggatcaaa |
37602653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 607 - 731
Target Start/End: Original strand, 52925679 - 52925804
Alignment:
| Q |
607 |
gtttcaagttagaatcaattatagaggcaaaatcaaatctacttgag-gaattcaaacatgtcaaaatcaattttacacctcttgaatcaattccgcctc |
705 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| | ||||| |||| | | |||||||||||||||||||| ||||||||| ||||||||| | ||| |
|
|
| T |
52925679 |
gtttcaagttagaatcagttatggaggcaaaattgattctacgtgagagcaaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactc |
52925778 |
T |
|
| Q |
706 |
atccaaaattgaaaccaaacatacac |
731 |
Q |
| |
|
||||||| || |||| ||||||||| |
|
|
| T |
52925779 |
ctccaaaagtggaaccgaacatacac |
52925804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 548 - 626
Target Start/End: Original strand, 49634049 - 49634127
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
||||||| |||| | |||||||||| |||||||||| || ||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
49634049 |
agttgaataataaacttgagtgtaataatcacatttagaggcaaaagctacaaatcctagcttcaagttagaatcaatt |
49634127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 556 - 626
Target Start/End: Original strand, 21513364 - 21513434
Alignment:
| Q |
556 |
aatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |||||||||||||||||| ||| | |||||| |||||||| |
|
|
| T |
21513364 |
aataaatttgagtgtaaaaatcacgtttggagtcaaaagctacaaatcctagctctaagttaaaatcaatt |
21513434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 589 - 647
Target Start/End: Complemental strand, 23290327 - 23290269
Alignment:
| Q |
589 |
caaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatcta |
647 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| || |||||| |||| |
|
|
| T |
23290327 |
caaaagctacaaatcatagtttcaagttagaatcaactatagagacataatcaattcta |
23290269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 588 - 688
Target Start/End: Original strand, 1441431 - 1441531
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctact-tgaggaattcaaacatgtcaaaatcaattttacacct |
686 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| || ||||||||| ||||||||| |||||| | ||| ||||||||||||| |||||| ||||||| |
|
|
| T |
1441431 |
tcaaaagctacaaatcctagtttcaag-tagagtcgattatagagacaaaatcaattctactcaaaagaaaccaaacatgtcaaactcaattctacacct |
1441529 |
T |
|
| Q |
687 |
ct |
688 |
Q |
| |
|
|| |
|
|
| T |
1441530 |
ct |
1441531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 630 - 696
Target Start/End: Original strand, 5046167 - 5046234
Alignment:
| Q |
630 |
gaggcaaaatcaaatctact-tgaggaattcaaacatgtcaaaatcaattttacacctcttgaatcaa |
696 |
Q |
| |
|
||||||||||||| |||||| | | ||| |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
5046167 |
gaggcaaaatcaactctactctaaagaaatcaaacatatcaaaatcaattttacacctctagaatcaa |
5046234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 736
Target Start/End: Original strand, 3845196 - 3845310
Alignment:
| Q |
623 |
aattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaacc |
721 |
Q |
| |
|
|||| |||||||| |||||| |||||||||| | |||||||||||||||||||| ||||||||| ||||||||| | | ||||||| || |||| |
|
|
| T |
3845196 |
aattctagaggcagaatcaattctacttgagatcaaacaaacatgtcaaaatcaattctacacctctagaatcaattttggttactccaaaagtggaacc |
3845295 |
T |
|
| Q |
722 |
aaacatacacaaagt |
736 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
3845296 |
aaacatacaccaagt |
3845310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 609 - 666
Target Start/End: Complemental strand, 48411065 - 48411007
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatg |
666 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||| ||| | ||||||||||| |
|
|
| T |
48411065 |
ttcaagttagaatcaattctagaggcaaaattaaatctactcgagaacattcaaacatg |
48411007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 616 - 696
Target Start/End: Complemental strand, 38022444 - 38022364
Alignment:
| Q |
616 |
tagaatcaattatagaggcaaaa-tcaaatctacttgaggaattcaaacatgtcaaaatcaattttacacctcttgaatcaa |
696 |
Q |
| |
|
||||||||||| | ||||||||| |||| |||||||||| ||| |||||||| ||||||||||| ||||| ||| ||||||| |
|
|
| T |
38022444 |
tagaatcaattttggaggcaaaaatcaattctacttgagcaat-caaacatgccaaaatcaattctacacttctagaatcaa |
38022364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 609 - 688
Target Start/End: Complemental strand, 39256690 - 39256610
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgag-gaattcaaacatgtcaaaatcaattttacacctct |
688 |
Q |
| |
|
||||||| |||| ||||| | ||| |||| |||| |||||||||| | | ||||||||||||||||||||| ||||||||| |
|
|
| T |
39256690 |
ttcaagtcagaaacaattttggagtcaaagtcaattctacttgagagtaatcaaacatgtcaaaatcaattctacacctct |
39256610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 547 - 603
Target Start/End: Complemental strand, 49891346 - 49891290
Alignment:
| Q |
547 |
aagttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatc |
603 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
49891346 |
aagttgaacagcaaatttgagtgtaaaaatcacatttagagtcaaatgctacaaatc |
49891290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 731
Target Start/End: Original strand, 218019 - 218086
Alignment:
| Q |
664 |
atgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatacac |
731 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
218019 |
atgtcaaaatcaatttcacatctccaaaatcaattttgccttatccaaaagtgaaaccaaacatacac |
218086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 696
Target Start/End: Original strand, 41115112 - 41115210
Alignment:
| Q |
597 |
acaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgaggaattcaaacatgtcaaaatcaattttacacctcttgaatcaa |
696 |
Q |
| |
|
||||||| ||| |||||||| |||| ||| |||||||| |||| |||||||||| || |||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
41115112 |
acaaatcctagcttcaagtttgaattaatctaggaggcaaagtcaattctacttgagtaac-caaacatgtcaaaatcaattttgcacttctagaatcaa |
41115210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 639
Target Start/End: Complemental strand, 43965709 - 43965618
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaat |
639 |
Q |
| |
|
|||||||||||| ||||||||||||| | || || |||| ||||| ||| ||||| ||| ||||||||| |||||||| | ||||| |||| |
|
|
| T |
43965709 |
agttgaacaataattttgagtgtaaaatttacgttcgaaggcaaaaactataaatcctagcttcaagttaaaatcaattcttgaggctaaat |
43965618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 778
Target Start/End: Original strand, 44279082 - 44279123
Alignment:
| Q |
737 |
gtagcttttggcaaaatcatggtggctcaccgtgattctgcc |
778 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
44279082 |
gtagcttttgtcaaaatcacggtggcacaccgtgattctgcc |
44279123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 1e-68; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 165 - 414
Target Start/End: Original strand, 46558096 - 46558340
Alignment:
| Q |
165 |
atagaacatgaaagcaatggagatctttccatcttcttatgcaaagcaacgaagatttttccatcttctattatatggaaattacggtggacacagtgaa |
264 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||| |||| |||||||| |||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
46558096 |
atagaacatgaaagcgatggagatatttccttcttcatatgtaaagcaacaaagatttttca----tctattatatgaaaattattgtggacacagtgaa |
46558191 |
T |
|
| Q |
265 |
aagcaatggagatctttcaatctttagaatggccctaactaagttaacacaataattatatccttagtagttaaagagttagtgaatgtgctctagcaac |
364 |
Q |
| |
|
| ||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
46558192 |
caacaatggagatctttccatctttataatggccctaacacagt-aacacaataattagatccttagtagttaaggagttagtaaatgtgctttagcaac |
46558290 |
T |
|
| Q |
365 |
aaagttgtgaattatctatggaaaaaagatggctttacaaagggatcaaa |
414 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
46558291 |
aaagttgtgagttatctatggaaagaagatggcttgacaaagggatcaaa |
46558340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 548 - 684
Target Start/End: Original strand, 32088585 - 32088719
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatcta |
647 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||| | ||||||||| ||||| ||| |||||||||||||||||| | ||| |||||||| |||| |
|
|
| T |
32088585 |
agttgaacaataaatttcagtgtaaaaatcacttttaa--tcaaaagctcgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaattcta |
32088681 |
T |
|
| Q |
648 |
cttgag-gaattcaaacatgtcaaaatcaattttacac |
684 |
Q |
| |
|
|||||| | | |||||||||||||||||||||||||| |
|
|
| T |
32088682 |
cttgagagcaaccaaacatgtcaaaatcaattttacac |
32088719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 556 - 603
Target Start/End: Complemental strand, 48832957 - 48832910
Alignment:
| Q |
556 |
aatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatc |
603 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48832957 |
aataaatttgagtgtaaaaatcacatttggagtcaaaagctacaaatc |
48832910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 448 - 499
Target Start/End: Complemental strand, 5167431 - 5167381
Alignment:
| Q |
448 |
tgtgtgtgtttggttctgcggtgataaaaacttgattttgaatgtattgatt |
499 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
5167431 |
tgtgtgtgtttggttctgcggtgatgaaaa-ttgattttgaatgaattgatt |
5167381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 548 - 687
Target Start/End: Complemental strand, 12655320 - 12655180
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatcta |
647 |
Q |
| |
|
|||||||||||| | || || ||||| |||| |||| | ||||| ||||||||| ||| ||||||||||||| |||| |||||||||| || |||||| |
|
|
| T |
12655320 |
agttgaacaataaactttagagtaaagatcatatttagactcaaatgctacaaattctagcttcaagttagaattaattctagaggcaaagtcgaatcta |
12655221 |
T |
|
| Q |
648 |
ct--tgaggaattcaaacatgtcaaaatcaattttacacctc |
687 |
Q |
| |
|
|| || || | ||||||||||||||||| |||||||||| |
|
|
| T |
12655220 |
ctccaaagcaact-aaacatgtcaaaatcaactttacacctc |
12655180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 548 - 642
Target Start/End: Complemental strand, 35592571 - 35592478
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
||||||| |||| |||| ||||||||||| | ||| |||||||||||| ||||| ||| || ||||||||||||||| ||||| ||||||||| |
|
|
| T |
35592571 |
agttgaagaataaatttaagtgtaaaaat-atgtttagagtcaaaagctaaaaatcctagctttaagttagaatcaattctagagtcaaaatcaa |
35592478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 588 - 698
Target Start/End: Complemental strand, 6021839 - 6021726
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgaggaat---tcaaacatgtcaaaatca---atttta |
681 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| |||||| ||| ||||||||||||||| ||||||||| ||| |||||| ||||||||||| ||| || |
|
|
| T |
6021839 |
tcaaaagctacatatcctagcttcaagt-agaatcgattctagaggcaaaatcaattctacttga--aatcaatcaaacttgtcaaaatcaattattcta |
6021743 |
T |
|
| Q |
682 |
cacctcttgaatcaatt |
698 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
6021742 |
cacctctagaatcaatt |
6021726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 659 - 700
Target Start/End: Complemental strand, 6041656 - 6041615
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctcttgaatcaattcc |
700 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
6041656 |
caaacatatcaaaatcaattttacacctctagaatcaattcc |
6041615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 698
Target Start/End: Complemental strand, 8381948 - 8381909
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
8381948 |
caaacatgtcaaaatcaattttatacctctagaatcaatt |
8381909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 727
Target Start/End: Complemental strand, 41517002 - 41516883
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcat |
707 |
Q |
| |
|
|||||||||||||||||| || | |||||||||| |||||| || | |||| || |||||| |||||||| ||||||||| |||| ||| | ||| | |
|
|
| T |
41517002 |
ttcaagttagaatcaattttaaacgcaaaatcaattctactcgaaaacattccaagatgtcataatcaattctacacctctagaatggattttgactcct |
41516903 |
T |
|
| Q |
708 |
ccaaaattgaaaccaaacat |
727 |
Q |
| |
|
|||||| || |||||||||| |
|
|
| T |
41516902 |
ccaaaagtggaaccaaacat |
41516883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 659 - 733
Target Start/End: Original strand, 15478122 - 15478196
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatacacaa |
733 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||| | | ||| ||||||| || |||||||||||||||| |
|
|
| T |
15478122 |
caaacatgtcaaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaacatacacaa |
15478196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 551 - 649
Target Start/End: Original strand, 18325402 - 18325500
Alignment:
| Q |
551 |
tgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctact |
649 |
Q |
| |
|
|||||| || |||| | |||||||||||||||| | |||||||| |||||| ||| ||||||||||| | || | | ||||||||||||| |||||| |
|
|
| T |
18325402 |
tgaacagtaaattttaatgtaaaaatcacatttagactcaaaagcatcaaatcctagcttcaagttagagttaactttggaggcaaaatcaattctact |
18325500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 564 - 642
Target Start/End: Complemental strand, 28024776 - 28024698
Alignment:
| Q |
564 |
tgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
|||||||||||| || |||| |||| |||||||||||| ||| || ||||||||| ||||| |||||| |||||||| |
|
|
| T |
28024776 |
tgagtgtaaaaaccatgtttggagtcgaaagctacaaattatagctttaagttagaaccaattctagaggaaaaatcaa |
28024698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 552 - 622
Target Start/End: Original strand, 31785067 - 31785137
Alignment:
| Q |
552 |
gaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatc |
622 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||| ||| | |||||||| ||| ||| |||||| ||||||| |
|
|
| T |
31785067 |
gaacaataaatttgagtgtaacaatcacttttggagtaataagctacatatcctagattcaagctagaatc |
31785137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 609 - 681
Target Start/End: Original strand, 21636616 - 21636689
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaatttta |
681 |
Q |
| |
|
||||||||| |||| ||||||||||| ||| |||||||||||||| | | |||||||| ||||| ||| ||||| |
|
|
| T |
21636616 |
ttcaagttaaaatctattatagaggcgaaaacaaatctacttgagaacactcaaacatatcaaactcagtttta |
21636689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 731 - 776
Target Start/End: Complemental strand, 39551395 - 39551350
Alignment:
| Q |
731 |
caaagtgtagcttttggcaaaatcatggtggctcaccgtgattctg |
776 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
39551395 |
caaagtgtaggttttggcaaaattgtggtggctcactgtgattctg |
39551350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 4e-53; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 39839644 - 39839534
Alignment:
| Q |
55 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839644 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39839545 |
T |
|
| Q |
155 |
atgattgctaa |
165 |
Q |
| |
|
||||||||||| |
|
|
| T |
39839544 |
atgattgctaa |
39839534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 39733314 - 39733424
Alignment:
| Q |
55 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39733314 |
cacaaaagttaaaaaagaattactatgaagcactgacacatataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39733413 |
T |
|
| Q |
155 |
atgattgctaa |
165 |
Q |
| |
|
||||||||||| |
|
|
| T |
39733414 |
atgattgctaa |
39733424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 548 - 640
Target Start/End: Complemental strand, 18349850 - 18349758
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatc |
640 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | || ||||| ||| |||||||||| ||| ||||||| |
|
|
| T |
18349850 |
agttgaacaataaatttgagtgtaaaaatcacgtttgaagtcaaaagctacaaaccctaacttcaaattaaaatcaattatggagtcaaaatc |
18349758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 588 - 653
Target Start/End: Complemental strand, 40422828 - 40422763
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgag |
653 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
40422828 |
tcaaaagccacaaatcctaacttcaagttagaatcaattcttgaggcaaaatcaattctacttgag |
40422763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 591 - 698
Target Start/End: Complemental strand, 36271012 - 36270905
Alignment:
| Q |
591 |
aaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgag-gaattcaaacatgtcaaaatcaattttacacctctt |
689 |
Q |
| |
|
||||||||||||| | ||||||| ||||| |||| ||||||||||||||| |||||| ||| ||| ||||||| |||||||||||| |||||||| |
|
|
| T |
36271012 |
aaagctacaaatcccaacttcaagt-agaataaattctagaggcaaaatcaattctactagagagaaaccaaacatcacaaaatcaatttcacacctcta |
36270914 |
T |
|
| Q |
690 |
gaatcaatt |
698 |
Q |
| |
|
||||||||| |
|
|
| T |
36270913 |
gaatcaatt |
36270905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 698
Target Start/End: Complemental strand, 883515 - 883379
Alignment:
| Q |
561 |
atttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attc |
659 |
Q |
| |
|
|||||||| |||| ||| ||||| ||||||||||||||||| ||| || ||||| |||||||||| |||||| |||||| |||| | ||| | || | |
|
|
| T |
883515 |
atttgagt-taaatatcgcatttagagtcaaaagctacaaatattaggtttaagttt-aatcaattatggaggcagaatcaattctattggagaacatgc |
883418 |
T |
|
| Q |
660 |
aaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
||| ||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
883417 |
aaatatgtcaaaatcaactctacacctctagaatcaatt |
883379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 561 - 698
Target Start/End: Complemental strand, 1242844 - 1242708
Alignment:
| Q |
561 |
atttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attc |
659 |
Q |
| |
|
|||||||| |||| ||| ||||| ||||||||||||||||| ||| || ||||| |||||||||| |||||| |||||| |||| | ||| | || | |
|
|
| T |
1242844 |
atttgagt-taaatatcgcatttagagtcaaaagctacaaatattaggtttaagttt-aatcaattatggaggcagaatcaattctattggagaacatgc |
1242747 |
T |
|
| Q |
660 |
aaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
||| ||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
1242746 |
aaatatgtcaaaatcaactctacacctctagaatcaatt |
1242708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 698
Target Start/End: Complemental strand, 45004949 - 45004910
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
45004949 |
caaacatgtcaaaatcaattctacacctctagaatcaatt |
45004910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 631 - 688
Target Start/End: Complemental strand, 12306727 - 12306669
Alignment:
| Q |
631 |
aggcaaaatcaaatctacttgag-gaattcaaacatgtcaaaatcaattttacacctct |
688 |
Q |
| |
|
|||||||||||| |||||||||| | | |||||||||||||||||||| ||||||||| |
|
|
| T |
12306727 |
aggcaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattctacacctct |
12306669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 635 - 729
Target Start/End: Complemental strand, 41360074 - 41359980
Alignment:
| Q |
635 |
aaaatcaaatctacttgaggaattcaaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatac |
729 |
Q |
| |
|
|||||||| ||||||||| ||| | ||||||||||||||||||| |||| || | |||| |||| |||| | |||| ||||||||||||||| |
|
|
| T |
41360074 |
aaaatcaattctacttgaagaaattaaacatgtcaaaatcaattatacatctttagaattaattttgccttttacaaatgtgaaaccaaacatac |
41359980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 609 - 693
Target Start/End: Original strand, 21436070 - 21436155
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacacctcttgaat |
693 |
Q |
| |
|
||||||||| |||||||| | |||| ||||| || |||||| ||| | ||| ||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
21436070 |
ttcaagttaaaatcaattctcgaggtaaaataaattctactcgagaacattaaaacatgtcaaaatcaattatacacttctagaat |
21436155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 581 - 626
Target Start/End: Original strand, 36271330 - 36271375
Alignment:
| Q |
581 |
tttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
36271330 |
tttgtagtcaaaagctagaaatcctagtttcaaattagaatcaatt |
36271375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 550 - 641
Target Start/End: Original strand, 1836224 - 1836315
Alignment:
| Q |
550 |
ttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatca |
641 |
Q |
| |
|
|||||||||| | ||||||||||| ||||| |||| |||||||||||| ||| ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
1836224 |
ttgaacaataaacttgagtgtaaatatcacttttgctttcaaaagctacacatcctagcttcaagttagaatcaattttagaggcaaaatca |
1836315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 665 - 731
Target Start/End: Complemental strand, 4554292 - 4554226
Alignment:
| Q |
665 |
tgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatacac |
731 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||| |
|
|
| T |
4554292 |
tgtcaaaatcaattttacacctctagaatcaatttaggctcatccaaaatttgaaccaaacatacac |
4554226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 548 - 639
Target Start/End: Complemental strand, 2924852 - 2924761
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaat |
639 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||||||||| | |||| | || |||||||||||||||||||| ||| |||||| |
|
|
| T |
2924852 |
agttgatcaatatatttgagtgtaaaaatcatgtttgaagtcaaaaacgacaatccctaacttcaagttagaatcaattatggagtcaaaat |
2924761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 566 - 642
Target Start/End: Original strand, 7437647 - 7437723
Alignment:
| Q |
566 |
agtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
||||||||| |||| ||| |||||||| ||| ||||| ||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
7437647 |
agtgtaaaactcacgtttagagtcaaaaactataaatcatagtttcaaattagaatcaattctagagtcaaaatcaa |
7437723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 659 - 728
Target Start/End: Original strand, 24776214 - 24776283
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacata |
728 |
Q |
| |
|
||||||| |||||||||||| |||||| | ||||||||| |||||| ||||||| || ||||||||||| |
|
|
| T |
24776214 |
caaacatatcaaaatcaattctacaccccgagaatcaatttcgcctcttccaaaagtggaaccaaacata |
24776283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 588 - 649
Target Start/End: Complemental strand, 32927927 - 32927867
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctact |
649 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||| ||| ||||||||||||| |||||| |
|
|
| T |
32927927 |
tcaaaagctacaaatcctagcttcaagt-agaatcaactattgaggcaaaatcaattctact |
32927867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 642
Target Start/End: Original strand, 11791746 - 11791837
Alignment:
| Q |
551 |
tgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
|||||| || |||| |||||||||||||| || | |||||||||||||||| ||| || ||| |||||||| |||| |||||||| |||| |
|
|
| T |
11791746 |
tgaacagtaaattttagtgtaaaaatcacgttgagactcaaaagctacaaatcctagcttgaaggtagaatcagttatggaggcaaattcaa |
11791837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 609 - 698
Target Start/End: Complemental strand, 11038197 - 11038107
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
|||||||||||||||| | | |||| |||||||| || | | ||| | || |||||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
11038197 |
ttcaagttagaatcaactctggaggaaaaatcaactccattcgagaacatccaaacatgtcaaaatcaattatatacctctagaatcaatt |
11038107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 659 - 731
Target Start/End: Complemental strand, 2697769 - 2697696
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctctt-gaatcaattccgcctcatccaaaattgaaaccaaacatacac |
731 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||| ||| |||| ||||| ||||||||||||||| |
|
|
| T |
2697769 |
caaacatgtcaaaatcaattttacagttcttaaaatcaattttgccccatcaaaaatcaaaaccaaacatacac |
2697696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 659 - 728
Target Start/End: Original strand, 39648266 - 39648335
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacata |
728 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||| | ||| || |||| || ||||||||||| |
|
|
| T |
39648266 |
caaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtgtaaccaaacata |
39648335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 581 - 642
Target Start/End: Original strand, 39648382 - 39648443
Alignment:
| Q |
581 |
tttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
|||| |||||||||||||||||| ||| || |||||||||||| || ||||| |||||||| |
|
|
| T |
39648382 |
tttggagtcaaaagctacaaatcctagcttaaagttagaatcagttctagagagaaaatcaa |
39648443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 529 - 624
Target Start/End: Complemental strand, 25195677 - 25195580
Alignment:
| Q |
529 |
gatacattcacataacaaa--agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaa |
624 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||| ||| | |||||||| |||| |||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
25195677 |
gatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagctacagatcctagtttcaagttagaatcaa |
25195580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 609 - 731
Target Start/End: Original strand, 29240522 - 29240645
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcat |
707 |
Q |
| |
|
|||||||||||||||| | | |||| |||||||| ||||||||| | || | |||||||||||||||||||||||||||| ||||||||| | || |
|
|
| T |
29240522 |
ttcaagttagaatcaactctggaggtaaaatcaattctacttgaaaatatcctaacatgtcaaaatcaattttacacctctagaatcaattttgattccc |
29240621 |
T |
|
| Q |
708 |
ccaaaattgaaaccaaacatacac |
731 |
Q |
| |
|
|||||| || |||||||||||||| |
|
|
| T |
29240622 |
ccaaaagtggaaccaaacatacac |
29240645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 586 - 642
Target Start/End: Original strand, 10874328 - 10874384
Alignment:
| Q |
586 |
agtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10874328 |
agtcaaaagctacaaattattgtttcaagttagaatcaattacagaggcaaaatcaa |
10874384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 548 - 639
Target Start/End: Original strand, 10564934 - 10565025
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaat |
639 |
Q |
| |
|
|||||||||||| | || || || |||||||||||| |||||||||||||||||| || |||||||||||||| | | |||||||||||| |
|
|
| T |
10564934 |
agttgaacaataaactttagcgttaaaatcacattttgagtcaaaagctacaaatcctaacttcaagttagaatcgaatttagaggcaaaat |
10565025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 609 - 736
Target Start/End: Original strand, 6544569 - 6544697
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcat |
707 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| | ||||||| | ||| || | ||||||||| |||||||||||| | ||||||||| |||| | |
|
|
| T |
6544569 |
ttcaagttagaatcaattctgaaggcaaaatcaattttacttgaaaacattaaagcttgtcaaaataaattttacacctatagaatcaatttttcctcct |
6544668 |
T |
|
| Q |
708 |
ccaaaattgaaaccaaacatacacaaagt |
736 |
Q |
| |
|
||||| ||||||||||||| ||| |||| |
|
|
| T |
6544669 |
ccaaatgtgaaaccaaacattcactaagt |
6544697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 588 - 698
Target Start/End: Original strand, 33141756 - 33141867
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgag-gaattcaaacatgtcaaaatcaattttacacct |
686 |
Q |
| |
|
||||||||| ||||| ||| ||| |||||||||||||| | |||| |||||||| | |||||||| | | ||||||| |||||||||||||||||| |
|
|
| T |
33141756 |
tcaaaagcttcaaattctaggttctagttagaatcaattctggaggtaaaatcaattatacttgagagcaaccaaacatatcaaaatcaattttacactg |
33141855 |
T |
|
| Q |
687 |
cttgaatcaatt |
698 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
33141856 |
ctagaatcaatt |
33141867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 588 - 684
Target Start/End: Complemental strand, 4910943 - 4910847
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacac |
684 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||| | |||||| |||||| |||| |||| || | ||||||||||| |||||||| ||||| |
|
|
| T |
4910943 |
tcaaaagctacaaatcatagcttcaag-tagaatcaatttttgaggcagaatcaattctaattgacgacaaccaaacatgtcagaatcaattctacac |
4910847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 590 - 698
Target Start/End: Original strand, 5724682 - 5724790
Alignment:
| Q |
590 |
aaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttg-aggaattcaaacatgtcaaaatcaattttacacctct |
688 |
Q |
| |
|
||||| |||||||| ||| ||||||| |||||||||| | ||||||||||||| ||||| || | | || ||||||||||| |||||||| ||||| ||| |
|
|
| T |
5724682 |
aaaagttacaaatcctagcttcaagt-agaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaattctacacttct |
5724780 |
T |
|
| Q |
689 |
tgaatcaatt |
698 |
Q |
| |
|
|||| |||| |
|
|
| T |
5724781 |
agaattaatt |
5724790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 664 - 728
Target Start/End: Complemental strand, 7263030 - 7262966
Alignment:
| Q |
664 |
atgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacata |
728 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||||| |||||||| |||| || ||||||||||| |
|
|
| T |
7263030 |
atgtcaaaatcaattctacacttctagaatcaattttgcctcatctaaaagtggaaccaaacata |
7262966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 659 - 731
Target Start/End: Original strand, 10400817 - 10400889
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatacac |
731 |
Q |
| |
|
||||||| |||||||||||| ||||||||| ||||||||| || || ||||| | || |||||||||||||| |
|
|
| T |
10400817 |
caaacatatcaaaatcaattatacacctctagaatcaattttgcatcctccaagagtggaaccaaacatacac |
10400889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 553 - 625
Target Start/End: Complemental strand, 13687662 - 13687590
Alignment:
| Q |
553 |
aacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaat |
625 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||| || || ||||||||| || || ||||||||||||||||| |
|
|
| T |
13687662 |
aacaataaatttgagtgtgaaaatcatatttggagacagaagctacaagtcctatcttcaagttagaatcaat |
13687590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 731
Target Start/End: Complemental strand, 578893 - 578822
Alignment:
| Q |
660 |
aaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatacac |
731 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| | | | |||||| |||||||||||||||||| |
|
|
| T |
578893 |
aaacatgtcaaaatcaattttactcctctaaaatcaatcttgtcccttccaaacttgaaaccaaacatacac |
578822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 698
Target Start/End: Original strand, 4080392 - 4080431
Alignment:
| Q |
659 |
caaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
4080392 |
caaacatgtcaaaatcaattttacacctttagaatcaatt |
4080431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 490
Target Start/End: Original strand, 10564809 - 10564848
Alignment:
| Q |
451 |
gtgtgtttggttctgcggtgataaaaacttgattttgaat |
490 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10564809 |
gtgtgtttggttctgcggtgacaaaaaattgattttgaat |
10564848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 479 - 520
Target Start/End: Original strand, 2234146 - 2234187
Alignment:
| Q |
479 |
ttgattttgaatgtattgattttagttaaatgtgagttgaat |
520 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
2234146 |
ttgattttgaatgaattgattttacttaaaagtgagttgaat |
2234187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 19040190 - 19040219
Alignment:
| Q |
74 |
ttactatgaagcactgacacagataccaga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19040190 |
ttactatgaagcactgacacagataccaga |
19040219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 620 - 688
Target Start/End: Complemental strand, 26550523 - 26550454
Alignment:
| Q |
620 |
atcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacacctct |
688 |
Q |
| |
|
||||||| ||||| ||||||||| |||| ||||| | | |||||||||||||||||||| ||||||||| |
|
|
| T |
26550523 |
atcaattctagagacaaaatcaattctagttgagtacaaccaaacatgtcaaaatcaattctacacctct |
26550454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 548 - 684
Target Start/End: Original strand, 33560580 - 33560717
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatcta |
647 |
Q |
| |
|
||||||||||| || | ||| |||||||||| ||| | |||||||||||||||| ||| || ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
33560580 |
agttgaacaatgaatgtcagtttaaaaatcacttttagactcaaaagctacaaatcctagctttcggttagaatcaattctagaggcaaaatcaattcta |
33560679 |
T |
|
| Q |
648 |
cttgag-gaattcaaacatgtcaaaatcaattttacac |
684 |
Q |
| |
|
|| ||| | | ||||||||||||||||||| |||||| |
|
|
| T |
33560680 |
ctcgagagcaaccaaacatgtcaaaatcaatgttacac |
33560717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 562 - 642
Target Start/End: Complemental strand, 29904075 - 29903995
Alignment:
| Q |
562 |
tttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
29904075 |
tttgagtgtaaaaatcacttttggagtcaaaagttacaaaatatagcttcaagttagaatcaattttagagtcaaaatcaa |
29903995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 588 - 644
Target Start/End: Original strand, 11271587 - 11271643
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaat |
644 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
11271587 |
tcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaatcaaat |
11271643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 548 - 678
Target Start/End: Complemental strand, 25319123 - 25318992
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaa-tcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatct |
646 |
Q |
| |
|
|||||||||||| |||| ||| |||||| |||||||| | ||||| |||||||||| || |||||||||||||||||| | ||| ||||||||| ||| |
|
|
| T |
25319123 |
agttgaacaataaatttcagtataaaaaatcacatttagactcaaa-gctacaaatcctaccttcaagttagaatcaattctggagacaaaatcaattct |
25319025 |
T |
|
| Q |
647 |
acttgag-gaattcaaacatgtcaaaatcaatt |
678 |
Q |
| |
|
||| ||| | | |||||||||||||||||||| |
|
|
| T |
25319024 |
actcgagagcaaccaaacatgtcaaaatcaatt |
25318992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 550 - 681
Target Start/End: Complemental strand, 35729018 - 35728886
Alignment:
| Q |
550 |
ttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctact |
649 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||| | |||||| |||||||| ||| ||||||||||||| ||||||||||||||| | || |||| | |
|
|
| T |
35729018 |
ttgaacaataaatttgggtgtaaaaatcatgttttagagcaaaaggtacaaatcatagcttcaagttagaattaattatagaggcaaagtgaattctaat |
35728919 |
T |
|
| Q |
650 |
tgagga-attcaaacatgtcaaaatcaatttta |
681 |
Q |
| |
|
|| | |||||||||| |||||||||||||| |
|
|
| T |
35728918 |
ggacaaccttcaaacatgccaaaatcaatttta |
35728886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 548 - 642
Target Start/End: Complemental strand, 22683939 - 22683845
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
|||||||||||| |||| | |||||||||||| ||| | |||||||||||| ||| ||| ||||||||| ||| |||| | ||||||||||||| |
|
|
| T |
22683939 |
agttgaacaataaatttcaatgtaaaaatcacgtttagactcaaaagctacagatcatagcttcaagttataattaattctggaggcaaaatcaa |
22683845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 548 - 626
Target Start/End: Original strand, 24921456 - 24921533
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
||||||| |||| |||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24921456 |
agttgaaaaataaatttga-tgtaaaaatcatgtatgaagtcaaaagctacaaattcaagtttcaagttagaatcaatt |
24921533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 548 - 641
Target Start/End: Complemental strand, 43628193 - 43628100
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatca |
641 |
Q |
| |
|
|||||||||||| |||| | ||| ||||||| |||| |||||||| ||||||||| ||| ||||| |||||||||| ||| || ||||||||| |
|
|
| T |
43628193 |
agttgaacaataaatttaaatgttaaaatcatgtttggagtcaaaatctacaaatcttagcttcaacttagaatcaactatggaagcaaaatca |
43628100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 590 - 698
Target Start/End: Original strand, 26617678 - 26617787
Alignment:
| Q |
590 |
aaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga--attcaaacatgtcaaaatcaattttacacctc |
687 |
Q |
| |
|
|||||||||||||| || |||| ||| | |||||||| ||||||||||||| |||| |||| | || |||||||||||||||||||||||||| || |
|
|
| T |
26617678 |
aaaagctacaaatcataacatcaatttatattcaattatggaggcaaaatcaattcta-ttgaaaagcatccaaacatgtcaaaatcaattttacacatc |
26617776 |
T |
|
| Q |
688 |
ttgaatcaatt |
698 |
Q |
| |
|
| ||||||||| |
|
|
| T |
26617777 |
tagaatcaatt |
26617787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 588 - 651
Target Start/End: Original strand, 54705440 - 54705503
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttg |
651 |
Q |
| |
|
|||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||| | |||||| |
|
|
| T |
54705440 |
tcaaaagctacaaaccctagcttcaagttagtatcaattattgaggcaaaatcaattatacttg |
54705503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 548 - 630
Target Start/End: Complemental strand, 4014243 - 4014161
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatag |
630 |
Q |
| |
|
|||||||| ||| |||| | ||||||||| || |||| ||||||||| | ||||| ||| |||||||||||||||||||||| |
|
|
| T |
4014243 |
agttgaaccataaattttactgtaaaaattacgtttggagtcaaaagatttaaatcatagcttcaagttagaatcaattatag |
4014161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 658 - 731
Target Start/End: Complemental strand, 2635128 - 2635055
Alignment:
| Q |
658 |
tcaaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatacac |
731 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||| | | || |||| ||||||||||||||||| |
|
|
| T |
2635128 |
tcaaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacatacac |
2635055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 444 - 488
Target Start/End: Complemental strand, 3652795 - 3652752
Alignment:
| Q |
444 |
attatgtgtgtgtttggttctgcggtgataaaaacttgattttga |
488 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3652795 |
attaagtgtgtgtttggttctgcggtgataaaaa-ttgattttga |
3652752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 456 - 520
Target Start/End: Complemental strand, 27045636 - 27045573
Alignment:
| Q |
456 |
tttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaatgtgagttgaat |
520 |
Q |
| |
|
||||||| | |||||||||||| || |||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
27045636 |
tttggttttacggtgataaaaaatt-attttgaatgaattgattttagttaaaagtaagttgaat |
27045573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 588 - 724
Target Start/End: Complemental strand, 8330151 - 8330013
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgag-gaattcaaacatgt-caaaatcaattttacacc |
685 |
Q |
| |
|
||||||||| ||| | ||| |||||||||||||| ||||| |||||| |||||| | |||||||| | | ||||||||| ||||| |||| | |||| |
|
|
| T |
8330151 |
tcaaaagctccaatttctagcttcaagttagaatccattatggaggcagaatcaattttacttgagagcaaccaaacatgtaaaaaattaattattcacc |
8330052 |
T |
|
| Q |
686 |
tcttgaatcaattccgcctcatccaaaattgaaaccaaa |
724 |
Q |
| |
|
||| |||||||||| | ||| |||| || |||||||||| |
|
|
| T |
8330051 |
tctagaatcaattctggctcctccagaagtgaaaccaaa |
8330013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 548 - 626
Target Start/End: Complemental strand, 53782676 - 53782598
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
||||||| ||| |||||||||||||||| | |||||| |||||| ||||||||| | | ||||| |||||||||||| |
|
|
| T |
53782676 |
agttgaaagatatatttgagtgtaaaaattatgtttgaaatcaaaatctacaaatcctggcttcaaattagaatcaatt |
53782598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 548 - 626
Target Start/End: Original strand, 26641625 - 26641705
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaa--aatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||| ||||||||||||||||| || ||| ||| |||||||| ||||||| |
|
|
| T |
26641625 |
agttgaataatagatttgagtgaaaagaaatcaagtttgaagtcaaaagctaaaagtcgcagtgtcaagttaatatcaatt |
26641705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 553 - 594
Target Start/End: Original strand, 28904434 - 28904475
Alignment:
| Q |
553 |
aacaatagatttgagtgtaaaaatcacatttgaagtcaaaag |
594 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||||||| |
|
|
| T |
28904434 |
aacaataaatatgagtgtaaaaatcacatttgatgtcaaaag |
28904475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 479 - 520
Target Start/End: Original strand, 37500207 - 37500248
Alignment:
| Q |
479 |
ttgattttgaatgtattgattttagttaaatgtgagttgaat |
520 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
37500207 |
ttgattttgaatgaattgattttagttaaaattgagttgaat |
37500248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 748 - 777
Target Start/End: Original strand, 39953508 - 39953537
Alignment:
| Q |
748 |
caaaatcatggtggctcaccgtgattctgc |
777 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39953508 |
caaaatcatggtggctcaccgtgattctgc |
39953537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 548 - 638
Target Start/End: Original strand, 12432963 - 12433053
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaa |
638 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||| ||| |||||| || |||||||| ||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
12432963 |
agttgaacaataaatttgtgtgtagaaatcacgttttgagtcaacagatacaaatcctagcttcaagttagaatccattctagaggcaaaa |
12433053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 584 - 696
Target Start/End: Complemental strand, 1105479 - 1105366
Alignment:
| Q |
584 |
gaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttac |
682 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||| |||||||| | | |||||||||| |||||||||| | | |||| ||||||||||||||| ||| |
|
|
| T |
1105479 |
gaagtcaaaagctacaaatcataacttcgagttaaaatcaattttgaaagcaaaatcaattctacttgagaacagccaaaaatgtcaaaatcaattatac |
1105380 |
T |
|
| Q |
683 |
acctcttgaatcaa |
696 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
1105379 |
acctctagaatcaa |
1105366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 548 - 693
Target Start/End: Original strand, 42439627 - 42439773
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatcta |
647 |
Q |
| |
|
|||||||| ||| | || |||||||||||||| ||| | |||||||||||| || ||| |||||||||||||||||| | |||| |||||||| |||| |
|
|
| T |
42439627 |
agttgaacgataaaatttagtgtaaaaatcacgtttagactcaaaagctacagattctagcttcaagttagaatcaattctggaggaaaaatcaattcta |
42439726 |
T |
|
| Q |
648 |
ct-tgaggaattcaaacatgtcaaaatcaattttacacctcttgaat |
693 |
Q |
| |
|
| | | | |||| ||||||||||||||||||||||||||||| |
|
|
| T |
42439727 |
gtcacaagcaaccaaatgtgtcaaaatcaattttacacctcttgaat |
42439773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 630 - 680
Target Start/End: Complemental strand, 38045443 - 38045392
Alignment:
| Q |
630 |
gaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaatttt |
680 |
Q |
| |
|
||||||||||||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
38045443 |
gaggcaaaatcaattctacttgagaacattcaaacatgtcaaaatcaatttt |
38045392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 568 - 642
Target Start/End: Original strand, 3970430 - 3970504
Alignment:
| Q |
568 |
tgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaa |
642 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| || ||| |||| |||||||||||| | ||||||||||||| |
|
|
| T |
3970430 |
tgtaaaaatcaagtttggagtcaaaagctacaattcctagcttcagattagaatcaattctggaggcaaaatcaa |
3970504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 609 - 698
Target Start/End: Complemental strand, 10898737 - 10898647
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgag-gaattcaaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | |||| ||| | | ||||||||||||||| |||| ||| |||| ||||||||| |
|
|
| T |
10898737 |
ttcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaattaattcgacagctctagaatcaatt |
10898647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 548 - 626
Target Start/End: Complemental strand, 29923317 - 29923239
Alignment:
| Q |
548 |
agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
|||| |||| || ||||||||||||||||||| ||| ||| |||| | ||||||| ||| |||||||||||||||||| |
|
|
| T |
29923317 |
agttaaacattaaatttgagtgtaaaaatcacgttttgagttaaaaacgacaaatcttagcttcaagttagaatcaatt |
29923239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 520 - 688
Target Start/End: Complemental strand, 35439220 - 35439050
Alignment:
| Q |
520 |
ttatgattggatacattcacataacaaa-agttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttag |
618 |
Q |
| |
|
||||| ||||||||||| || ||| || |||||||||||| || ||||| | || || ||||||| |||||||| ||||||| ||| ||||| |||| |
|
|
| T |
35439220 |
ttatgtttggatacattaacgtaaaaatgagttgaacaataaatgtgagtattaagattacatttggagtcaaaaagtacaaattctagcttcaatttag |
35439121 |
T |
|
| Q |
619 |
aatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacacctct |
688 |
Q |
| |
|
||| || | ||||| | |||| || || ||||||||| || ||||||||| |||||||||| | ||||||| |
|
|
| T |
35439120 |
aatgaaatctagagtcgaaataaattccacttgaggacatccaaacatgttaaaatcaattattcacctct |
35439050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 550 - 624
Target Start/End: Original strand, 42194543 - 42194617
Alignment:
| Q |
550 |
ttgaacaatagatttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaa |
624 |
Q |
| |
|
|||||||||| |||| |||||||||| ||||||| | |||||||||||||| | ||| |||| ||||||||||| |
|
|
| T |
42194543 |
ttgaacaataaatttcagtgtaaaaaccacatttagactcaaaagctacaaaacctagcttcaggttagaatcaa |
42194617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 588 - 641
Target Start/End: Complemental strand, 9818769 - 9818717
Alignment:
| Q |
588 |
tcaaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatca |
641 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
9818769 |
tcaaaagctacaaatcatagcttcaagt-agaatcaattatggaggcaaaatca |
9818717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 698
Target Start/End: Complemental strand, 10161836 - 10161751
Alignment:
| Q |
614 |
gttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||| | ||| | | ||||||||||||| ||||||| ||||| ||| ||||||||| |
|
|
| T |
10161836 |
gttagaatcaattctagaggcaaagtcaattctattcgagaacaatcaaacatgtcaagatcaattctacacatctagaatcaatt |
10161751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 561 - 626
Target Start/End: Complemental strand, 17862568 - 17862503
Alignment:
| Q |
561 |
atttgagtgtaaaaatcacatttgaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
|||||||||| |||||||| |||||| |||||||||||| || ||| ||||||||| |||||||| |
|
|
| T |
17862568 |
atttgagtgtgaaaatcacgtttgaattcaaaagctacatattatagcttcaagttaaaatcaatt |
17862503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 452 - 519
Target Start/End: Original strand, 2937839 - 2937904
Alignment:
| Q |
452 |
tgtgtttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaatgtgagttgaa |
519 |
Q |
| |
|
||||||||||||| || ||| |||| ||||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
2937839 |
tgtgtttggttctacgatgaaaaaa--ttgattttgaatgaattgattttagctaaaggtgagttgaa |
2937904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 736
Target Start/End: Original strand, 2938016 - 2938091
Alignment:
| Q |
662 |
acatgtcaaaatcaatttt-acacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatacacaaagt |
736 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||| | ||| |||||||| ||||||||||||||| |||| |
|
|
| T |
2938016 |
acatgtcaaaatcaatttttactcctctagaatcaattttggctcctccaaaataaaaaccaaacatacaccaagt |
2938091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 698
Target Start/End: Original strand, 34250428 - 34250511
Alignment:
| Q |
616 |
tagaatcaattatagaggcaaaatcaaatctacttgag-gaattcaaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||| || ||| |||||||||||||| ||||| ||||| ||| ||||||||| |
|
|
| T |
34250428 |
tagaatcaattctagaggcataatcaattctactctagagaaaccaaacatgtcaaaaacaattctacacatctagaatcaatt |
34250511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 584 - 626
Target Start/End: Complemental strand, 1102173 - 1102131
Alignment:
| Q |
584 |
gaagtcaaaagctacaaatcgtagtttcaagttagaatcaatt |
626 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
1102173 |
gaagtcaaaagctacaaatcctagcttcaagttaaaatcaatt |
1102131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 660 - 698
Target Start/End: Original strand, 3043126 - 3043164
Alignment:
| Q |
660 |
aaacatgtcaaaatcaattttacacctcttgaatcaatt |
698 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
3043126 |
aaacatgtcaaaatcaattctacacctctagaatcaatt |
3043164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 656 - 730
Target Start/End: Original strand, 10859939 - 10860013
Alignment:
| Q |
656 |
attcaaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacataca |
730 |
Q |
| |
|
||||||||| |||||||||| || ||||||||| ||| |||| ||||| ||||||| || ||||||||||||| |
|
|
| T |
10859939 |
attcaaacaggtcaaaatcatttctacacctctataatgaattttgcctcttccaaaagtggaaccaaacataca |
10860013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 589 - 647
Target Start/End: Complemental strand, 38845819 - 38845761
Alignment:
| Q |
589 |
caaaagctacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatcta |
647 |
Q |
| |
|
|||||||||| ||| ||| ||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
38845819 |
caaaagctacgaattctagcttcaagtcagaatcaactatagaggcaaaatcaattcta |
38845761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 660 - 729
Target Start/End: Original strand, 11911931 - 11912000
Alignment:
| Q |
660 |
aaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacatac |
729 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||||||| | | | |||||||| ||||||||||||| |
|
|
| T |
11911931 |
aaacaagtcaaaatcaattttacatctctagaatcaattttgaccccaccaaaattaaaaccaaacatac |
11912000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 609 - 673
Target Start/End: Complemental strand, 29922641 - 29922576
Alignment:
| Q |
609 |
ttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaat |
673 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||| |||||| ||| | | |||||||||||||||| |
|
|
| T |
29922641 |
ttcaagttaaaatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgtcaaaat |
29922576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 598 - 728
Target Start/End: Original strand, 12366 - 12498
Alignment:
| Q |
598 |
caaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatca-attttacacctcttgaatca |
695 |
Q |
| |
|
||||| |||| ||||||||||||||| || | ||||||||||||| |||||||||| | || ||||||||||||||| | |||||||||| | ||| || |
|
|
| T |
12366 |
caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaaca |
12465 |
T |
|
| Q |
696 |
attccgcctcatccaaaattgaaaccaaacata |
728 |
Q |
| |
|
||| | ||| ||||||| ||||| |||||||| |
|
|
| T |
12466 |
attttgactcctccaaaagtgaaatcaaacata |
12498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0899 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 660 - 730
Target Start/End: Complemental strand, 593 - 523
Alignment:
| Q |
660 |
aaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacataca |
730 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |||||||| |||| | ||| |||||||||| |
|
|
| T |
593 |
aaacatgtcaaaatcaattgtgcacctcttgaatcaattttgcctcatctaaaagtaaaatcaaacataca |
523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0971 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0971
Description:
Target: scaffold0971; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 660 - 730
Target Start/End: Original strand, 1807 - 1877
Alignment:
| Q |
660 |
aaacatgtcaaaatcaattttacacctcttgaatcaattccgcctcatccaaaattgaaaccaaacataca |
730 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||| |||||||| || | ||||| |||||||||| |
|
|
| T |
1807 |
aaacacgtcaaaatcaattttgcacctgttgaatcaattttgcctcatctaatagtgaaatcaaacataca |
1877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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