View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7728_low_11 (Length: 304)

Name: NF7728_low_11
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7728_low_11
NF7728_low_11
[»] chr3 (6 HSPs)
chr3 (19-164)||(45517383-45517527)
chr3 (165-213)||(35432221-35432269)
chr3 (165-213)||(44406197-44406245)
chr3 (195-291)||(38337395-38337495)
chr3 (195-244)||(52398353-52398402)
chr3 (165-213)||(7359842-7359890)
[»] chr2 (19 HSPs)
chr2 (19-164)||(19637469-19637613)
chr2 (19-164)||(19836062-19836206)
chr2 (165-294)||(8536803-8536934)
chr2 (183-277)||(8536155-8536251)
chr2 (202-272)||(42369680-42369752)
chr2 (165-212)||(26893482-26893529)
chr2 (165-212)||(26898921-26898968)
chr2 (165-223)||(6852799-6852857)
chr2 (195-278)||(42370883-42370968)
chr2 (164-267)||(26487789-26487894)
chr2 (195-272)||(4976444-4976523)
chr2 (195-272)||(4994351-4994430)
chr2 (165-213)||(6851912-6851960)
chr2 (195-280)||(4975726-4975813)
chr2 (195-278)||(41519858-41519943)
chr2 (195-228)||(36390987-36391020)
chr2 (199-280)||(4993638-4993721)
chr2 (192-228)||(19521368-19521404)
chr2 (199-231)||(36391654-36391686)
[»] chr8 (13 HSPs)
chr8 (165-294)||(33801499-33801630)
chr8 (165-294)||(38686303-38686434)
chr8 (165-277)||(33802307-33802421)
chr8 (170-277)||(38686989-38687098)
chr8 (170-241)||(32551080-32551151)
chr8 (195-291)||(12349997-12350095)
chr8 (195-283)||(39257664-39257754)
chr8 (195-245)||(43971308-43971358)
chr8 (195-269)||(43972028-43972104)
chr8 (190-279)||(12350586-12350677)
chr8 (165-213)||(42638148-42638196)
chr8 (195-291)||(43924936-43925036)
chr8 (195-228)||(40450971-40451004)
[»] chr4 (11 HSPs)
chr4 (165-294)||(53665003-53665134)
chr4 (165-277)||(53664212-53664326)
chr4 (169-277)||(50710351-50710461)
chr4 (212-294)||(50709706-50709790)
chr4 (165-223)||(20681722-20681780)
chr4 (190-266)||(6246809-6246887)
chr4 (224-291)||(6247390-6247460)
chr4 (165-213)||(23574617-23574665)
chr4 (195-234)||(232028-232067)
chr4 (195-267)||(6680286-6680360)
chr4 (164-213)||(55511901-55511950)
[»] chr1 (11 HSPs)
chr1 (165-267)||(38618230-38618334)
chr1 (165-213)||(50354996-50355044)
chr1 (163-213)||(24976719-24976769)
chr1 (195-269)||(31788218-31788294)
chr1 (195-291)||(14924704-14924803)
chr1 (195-279)||(11469111-11469197)
chr1 (195-278)||(14925275-14925360)
chr1 (163-213)||(29334947-29334997)
chr1 (165-213)||(51610221-51610269)
chr1 (165-213)||(51976264-51976312)
chr1 (222-291)||(11469685-11469756)
[»] chr7 (9 HSPs)
chr7 (199-270)||(46757458-46757531)
chr7 (165-213)||(34852557-34852605)
chr7 (195-266)||(12732277-12732350)
chr7 (165-205)||(42344222-42344262)
chr7 (165-213)||(46814247-46814295)
chr7 (165-213)||(5004188-5004236)
chr7 (165-213)||(30916496-30916544)
chr7 (195-243)||(32548643-32548691)
chr7 (165-213)||(34853334-34853382)
[»] chr5 (6 HSPs)
chr5 (165-223)||(43589152-43589210)
chr5 (190-291)||(4554682-4554785)
chr5 (165-213)||(42993200-42993248)
chr5 (167-213)||(18153434-18153480)
chr5 (164-238)||(7495232-7495306)
chr5 (192-234)||(16690369-16690411)
[»] scaffold0189 (1 HSPs)
scaffold0189 (195-269)||(12801-12877)
[»] chr6 (4 HSPs)
chr6 (162-206)||(34716162-34716206)
chr6 (165-206)||(10607351-10607392)
chr6 (165-213)||(19063660-19063708)
chr6 (165-213)||(20687464-20687512)
[»] scaffold0129 (1 HSPs)
scaffold0129 (195-231)||(43200-43236)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 45517383 - 45517527
Alignment:
Q  19 agagagagacttcaaaggttgtgtccatggatacttactttaatgaatgaagcaaaccactcgcaaaaatgtatatattacgtgcaacaccaccctctgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45517383 agagagagacttcaaaggttgtgtccatggatacttactttaatgaacgaagcaaac-actcgcaaaaatgtatatattacgtgcaacaccaccctctgg 45517481  T
Q  119 ccgtgcttggggttcaggcttgagttgagttaaatgattcttttat 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45517482 ccgtgcttggggttcaggcttgagttgagttaaatgattcttttat 45517527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 35432269 - 35432221
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  35432269 ggtggcatttagggtgggtagaaggaattctttcccaccatggaaaagt 35432221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 44406197 - 44406245
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||| | ||||||||||||||||||| |||||    
T  44406197 ggtggcatttagggtgggtaggaagaattctttcccaccatggaaaagt 44406245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 291
Target Start/End: Complemental strand, 38337495 - 38337395
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatctttttt--cacactcacca 290  Q
    ||||||||||||||||||  ||| || ||| ||| || || ||||||||||  ||  |||||||||||||||||||| || ||||||  |||||||||||    
T  38337495 tttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccagatttttttttccacactcacca 38337396  T
Q  291 c 291  Q
    |    
T  38337395 c 38337395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 52398353 - 52398402
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaaca 244  Q
    ||||||||||||| ||||||||| |||||||||| || || |||||||||    
T  52398353 tttcccaccatggaaaagtaaattttaaccattagattaaatagagaaca 52398402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 7359890 - 7359842
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||  |||||  ||||||||||||||||||||    
T  7359890 ggtggcatttagggtgggtaagaggaagactttcccaccatgggaaagt 7359842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 19637613 - 19637469
Alignment:
Q  19 agagagagacttcaaaggttgtgtccatggatacttactttaatgaatgaagcaaaccactcgcaaaaatgtatatattacgtgcaacaccaccctctgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19637613 agagagagacttcaaaggttgtgtccatggatacttactttaatgaacgaagcaaac-actcgcaaaaatgtatatattacgtgcaacaccaccctctgg 19637515  T
Q  119 ccgtgcttggggttcaggcttgagttgagttaaatgattcttttat 164  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  19637514 ccgtgcttggggttcaggcttgagttgagttagatgattcttttat 19637469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 19836206 - 19836062
Alignment:
Q  19 agagagagacttcaaaggttgtgtccatggatacttactttaatgaatgaagcaaaccactcgcaaaaatgtatatattacgtgcaacaccaccctctgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19836206 agagagagacttcaaaggttgtgtccatggatacttactttaatgaacgaagcaaac-actcgcaaaaatgtatatattacgtgcaacaccaccctctgg 19836108  T
Q  119 ccgtgcttggggttcaggcttgagttgagttaaatgattcttttat 164  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  19836107 ccgtgcttggggttcaggcttgagttgagttagatgattcttttat 19836062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 8536934 - 8536803
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactc 262  Q
    |||||||||||||||| |||||||||||||||||| ||||||| ||||||||| || ||||||| ||||||||||||||||||  |||||||||||||||    
T  8536934 ggtggcatttagggtgggtagaaggaattctttcctaccatggaaaagtaaatgttgaccattagataaagtagagaacatggttttatcatagacactc 8536835  T
Q  263 aacaccaaatcttttttcacactcaccaccaa 294  Q
    ||||||||||||||||||||||||||||||||    
T  8536834 aacaccaaatcttttttcacactcaccaccaa 8536803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 8536155 - 8536251
Alignment:
Q  183 tagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatg--gttatcatagacactcaacaccaaatctttt 277  Q
    ||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||   ||||||||||||||||||| ||||| ||||    
T  8536155 tagaaggaattcttttccaccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaacatcaaatatttt 8536251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 42369680 - 42369752
Alignment:
Q  202 ccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaat 272  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    |||||||||||||||||||||||||    
T  42369680 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatcatagacactcaacaccaaat 42369752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 26893482 - 26893529
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaag 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  26893482 ggtggcatttagggtgggtagaaggaattctttcccaccatgggaaag 26893529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 26898921 - 26898968
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaag 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  26898921 ggtggcatttagggtgggtagaaggaattctttcccaccatgggaaag 26898968  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 6852857 - 6852799
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaac 223  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||    
T  6852857 ggtggcatttagggtgggtaggaggaattctttcccaccataggaaagtaaattttaac 6852799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 42370968 - 42370883
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactcaacaccaaatcttttt 278  Q
    ||||||||||||||||||||||||||  |||||| ||||||| ||||| || |  ||||||||||||||| ||||||||| |||||    
T  42370968 tttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacactcgacaccaaattttttt 42370883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 26487894 - 26487789
Alignment:
Q  164 tggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagaga--acatggttatcatagacact 261  Q
    ||||||||||||||||| |||| ||||||||||||| |||||| |||||| ||  || ||||||| || |||||| ||  ||||  ||||||||||| ||    
T  26487894 tggtggcatttagggtgggtaggaggaattctttcctaccatgagaaagttaagcttgaccattagattaagtagtgaccacattcttatcatagactct 26487795  T
Q  262 caacac 267  Q
    ||||||    
T  26487794 caacac 26487789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 4976523 - 4976444
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggttat--catagacactcaacaccaaat 272  Q
    |||||||| |||||||||| ||| |||||||||| ||||| ||||||||||  || |  |||||||||||||||||||||    
T  4976523 tttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaaat 4976444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 4994430 - 4994351
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggttat--catagacactcaacaccaaat 272  Q
    |||||||| |||||||||| ||| |||||||||| ||||| ||||||||||  || |  |||||||||||||||||||||    
T  4994430 tttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaaat 4994351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 6851912 - 6851960
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  6851912 ggtggcatttagggtgggtaggaggaattctttcccatcatgggaaagt 6851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 4975726 - 4975813
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttttc 280  Q
    ||||||||||||| ||||  ||| || ||||||||||||||||||||||||    |||||||||| |||||||| || || |||||||    
T  4975726 tttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcagattttttttc 4975813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 41519943 - 41519858
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttt 278  Q
    |||||||||||||||||||   | || ||| ||||||||||||||||||||    ||| ||||||||| ||||||||||| |||||    
T  41519943 tttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacaccaaattttttt 41519858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 36390987 - 36391020
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccatta 228  Q
    ||||||||||||||||||||||| ||||||||||    
T  36390987 tttcccaccatgggaaagtaaattttaaccatta 36391020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 4993638 - 4993721
Alignment:
Q  199 ccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttttc 280  Q
    ||||||||| ||||  ||| || ||||||||||||||||||||||||    |||||||||| |||||||| || || |||||||    
T  4993638 ccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcagattttttttc 4993721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 19521368 - 19521404
Alignment:
Q  192 ttctttcccaccatgggaaagtaaatattaaccatta 228  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  19521368 ttctttcccatcatgggaaagtaaatcttaaccatta 19521404  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 36391686 - 36391654
Alignment:
Q  199 ccaccatgggaaagtaaatattaaccattaaat 231  Q
    ||||||||||||||||||| |||||||||||||    
T  36391686 ccaccatgggaaagtaaattttaaccattaaat 36391654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 165 - 294
Target Start/End: Original strand, 33801499 - 33801630
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactc 262  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  33801499 ggtggcatttagggtgggtagaaggaattctttcccaccatggaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactc 33801598  T
Q  263 aacaccaaatcttttttcacactcaccaccaa 294  Q
    ||||||||||||||||||||||||||||||||    
T  33801599 aacaccaaatcttttttcacactcaccaccaa 33801630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 165 - 294
Target Start/End: Original strand, 38686303 - 38686434
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactc 262  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||    
T  38686303 ggtggcatttagggtgggtagaaggaattcttttccaccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactc 38686402  T
Q  263 aacaccaaatcttttttcacactcaccaccaa 294  Q
    ||||||||||||||||||||||||||||||||    
T  38686403 aacaccaaatcttttttcacactcaccaccaa 38686434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 33802421 - 33802307
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactc 262  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||||||    
T  33802421 ggtggcatttagggtgggtagaaggaattctttcccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactc 33802322  T
Q  263 aacaccaaatctttt 277  Q
    |||| ||||||||||    
T  33802321 aacatcaaatctttt 33802307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 170 - 277
Target Start/End: Complemental strand, 38687098 - 38686989
Alignment:
Q  170 catttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatg--gttatcatagacactcaacac 267  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||   |||||||||||||||||||     
T  38687098 catttagggtgggtagaaggaattctttcccacaatgggaaagtaaatattgatcattagataaagtagagaacatgattttatcatagacactcaacat 38686999  T
Q  268 caaatctttt 277  Q
    ||||| ||||    
T  38686998 caaatatttt 38686989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 32551151 - 32551080
Alignment:
Q  170 catttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagaga 241  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||||||    
T  32551151 catttagggtgggtagaaggaattctttcccatcataggaaagtaaatattgaccattagataaactagaga 32551080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 12349997 - 12350095
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatcttttttcacactcaccac 291  Q
    ||||||||||||| |||   ||| |||||||||| |||||||| |||||||| ||  |||||||||||||||||||| || ||||  ||||||||||||    
T  12349997 tttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactcaacaccagattttttcccacactcaccac 12350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 39257664 - 39257754
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttttcaca 283  Q
    ||||||||||||||||||  ||| || ||||||||||||||||||||||||    |||||||||| |||||||| ||||| ||||| ||||    
T  39257664 tttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaaatttttttccaca 39257754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 43971308 - 43971358
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat 245  Q
    ||||||||||||||||||  ||| || ||||||||||||||||||||||||    
T  43971308 tttcccaccatgggaaagctaattttgaccattaaataaagtagagaacat 43971358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 43972104 - 43972028
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggttat--catagacactcaacacca 269  Q
    |||||||| |||||||||| ||| |||||||||| ||||| ||||||||||  || |  ||||||||||||||||||    
T  43972104 tttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 43972028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 12350677 - 12350586
Alignment:
Q  190 aattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatctttttt 279  Q
    |||| |||||||||||||||||   ||| || ||||||| |||| |||||||||||  ||  |||||||||||||||||||| || ||||||    
T  12350677 aattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagatttttttt 12350586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 42638148 - 42638196
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  42638148 ggtggcatttagggtgggtaggaggaattcttttccaccatgagaaagt 42638196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 291
Target Start/End: Complemental strand, 43925036 - 43924936
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatctttttt--cacactcacca 290  Q
    |||||||||||| |||||| ||| || ||| ||| || || ||||||||||  ||  |||||||||||||||||||| || ||||||  |||||||||||    
T  43925036 tttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccagatttttttttccacactcacca 43924937  T
Q  291 c 291  Q
    |    
T  43924936 c 43924936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 40451004 - 40450971
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccatta 228  Q
    ||||||||||||||||||||||| ||||||||||    
T  40451004 tttcccaccatgggaaagtaaattttaaccatta 40450971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 53665134 - 53665003
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactc 262  Q
    |||||||||||||||| ||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  53665134 ggtggcatttagggtgggtagaaggaattctttcccaccataaaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactc 53665035  T
Q  263 aacaccaaatcttttttcacactcaccaccaa 294  Q
    ||||||||||||||||||||||||||| ||||    
T  53665034 aacaccaaatcttttttcacactcacctccaa 53665003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 53664212 - 53664326
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactc 262  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||  |||||||||||||||    
T  53664212 ggtggtatttagggtgggtagaaggaattctttcccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactc 53664311  T
Q  263 aacaccaaatctttt 277  Q
    |||| ||||||||||    
T  53664312 aacatcaaatctttt 53664326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 50710461 - 50710351
Alignment:
Q  169 gcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatg--gttatcatagacactcaaca 266  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||   |||||||||||||||||||    
T  50710461 gcatttaaggtgggtagaaggaattctttcccaccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaaca 50710362  T
Q  267 ccaaatctttt 277  Q
    |||||| ||||    
T  50710361 ccaaatatttt 50710351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 50709706 - 50709790
Alignment:
Q  212 gtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatcttttttcacactcaccaccaa 294  Q
    ||||||||| || |||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  50709706 gtaaatattgactattagataaagtagagaacatagttttatcatagacactcaacaccaaatcttttttcacactcaccaccaa 50709790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 20681722 - 20681780
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaac 223  Q
    |||||||||||||||| |||| |||||||||||||||| |||||||||||||| |||||    
T  20681722 ggtggcatttagggtgggtaggaggaattctttcccactatgggaaagtaaattttaac 20681780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 6246809 - 6246887
Alignment:
Q  190 aattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaaca 266  Q
    |||| ||||||||||||||||||| ||| || ||||||| |||| |||||||||||    |||||||||||||||||||    
T  6246809 aattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 6246887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 6247460 - 6247390
Alignment:
Q  224 cattaaataaagtagagaaca---tggttatcatagacactcaacaccaaatcttttttcacactcaccac 291  Q
    ||||| |||||||||||||||   |  |||||||||||||||||||||| || ||||| ||||||||||||    
T  6247460 cattagataaagtagagaacatactttttatcatagacactcaacaccagatttttttccacactcaccac 6247390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 23574665 - 23574617
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    ||||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  23574665 ggtggcatttagggtggataggaggaattctttcccaccatggaaaagt 23574617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 232067 - 232028
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaa 234  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  232067 tttcccaccatgggaaagtaaattttaaccattagataaa 232028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 6680360 - 6680286
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactcaacac 267  Q
    |||| ||||||||||||||||||||| ||||||| || ||||| ||||||| |  ||||||||||  ||||||||    
T  6680360 tttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaacac 6680286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 55511901 - 55511950
Alignment:
Q  164 tggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    ||||||||||||||||  |||| |||||| |||||||||||| |||||||    
T  55511901 tggtggcatttagggtaggtaggaggaatactttcccaccataggaaagt 55511950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 267
Target Start/End: Original strand, 38618230 - 38618334
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagaga--acatggttatcatagacactc 262  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||| ||  || ||||||| || |||||| ||  ||||  ||||||||||| |||    
T  38618230 ggtggcatttagggtgggtaggaggaattctttcccaccatgggaaagttaagtttgaccattagattaagtagtgaacacattcttatcatagactctc 38618329  T
Q  263 aacac 267  Q
    |||||    
T  38618330 aacac 38618334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 50355044 - 50354996
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  50355044 ggtggcatttagggtgggtaggaggaattctttcccaccatgggaaagt 50354996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 24976769 - 24976719
Alignment:
Q  163 atggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  24976769 atggtggcatttagggtgggtaggaggaattcttttccaccatgggaaagt 24976719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 31788294 - 31788218
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacacca 269  Q
    ||||||||||||||||||| ||| |||||||||| ||||| ||||||||||    ||| ||||||||||||||||||    
T  31788294 tttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 31788218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 14924704 - 14924803
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatctttttt-cacactcaccac 291  Q
    ||||||||||||||||||  ||| || ||| |||||| || ||||||||||  ||  |||||||||||||||||||| || |||||| ||||||||||||    
T  14924704 tttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacaccagattttttttccacactcaccac 14924803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 11469111 - 11469197
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatctttttt 279  Q
    ||||||||||||||||||  ||| || ||||||| |||| |||||||||||    |||||||||||||||||||||| || ||||||    
T  11469111 tttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagatttttttt 11469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 14925360 - 14925275
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttt 278  Q
    ||||||||||||||||||  ||| || ||||||| ||||| ||||||||||    |||||||||||||||||||||| || |||||    
T  14925360 tttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccagattttttt 14925275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 29334997 - 29334947
Alignment:
Q  163 atggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||| ||||||||||| |||| ||||||| |||||||||||||||||||    
T  29334997 atggtgtcatttagggtgggtaggaggaattatttcccaccatgggaaagt 29334947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 51610269 - 51610221
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||| ||||||  |||||||||||||||||||    
T  51610269 ggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagt 51610221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 51976264 - 51976312
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||| ||||||||||| ||||||||| |||||    
T  51976264 ggtggcatttagggtgggtaggaggaattcttttccaccatggaaaagt 51976312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 11469756 - 11469685
Alignment:
Q  222 accattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatcttttttcacactcaccac 291  Q
    ||||||| ||||||||||||||||  ||  |||||||||| ||||||||| || ||||  ||||||||||||    
T  11469756 accattagataaagtagagaacatacttttatcatagacattcaacaccagattttttcccacactcaccac 11469685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 46757458 - 46757531
Alignment:
Q  199 ccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaa 270  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||||    |||||||||||||||||||||||    
T  46757458 ccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacaccaa 46757531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 34852557 - 34852605
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  34852557 ggtggcatttagggtgggtagaaggaattcttttccaccatgggaaagt 34852605  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 12732277 - 12732350
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactcaaca 266  Q
    |||||||||||||||||||||||||| ||||||| || | ||| ||||||| |  ||||||||||| |||||||    
T  12732277 tttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaaca 12732350  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 42344262 - 42344222
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccat 205  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  42344262 ggtggcatttagggtgggtaggaggaattctttcccaccat 42344222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 46814295 - 46814247
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    ||||| ||||||| || |||| |||||||||||||||||||||||||||    
T  46814295 ggtggtatttaggatgggtaggaggaattctttcccaccatgggaaagt 46814247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 5004188 - 5004236
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||| |||||||| || |||| ||||||||||| |||||||||||||||    
T  5004188 ggtgacatttaggatgggtaggaggaattcttttccaccatgggaaagt 5004236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 30916544 - 30916496
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||| | ||||||||||||| ||||| |||||    
T  30916544 ggtggcatttagggtgggtaggaagaattctttcccatcatggaaaagt 30916496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 32548691 - 32548643
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaac 243  Q
    ||||||||||||||||||| ||| ||| |||||| || |||||||||||    
T  32548691 tttcccaccatgggaaagttaatgttagccattagatcaagtagagaac 32548643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 34853382 - 34853334
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||| |||||  |||||||||||| |||||||    
T  34853382 ggtggcatttagggtgggtaggaggaagactttcccaccataggaaagt 34853334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 43589210 - 43589152
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaac 223  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||| || |||||    
T  43589210 ggtggcatttagggtgggtaggaggaattctttcccactatgggaaagtagattttaac 43589152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 291
Target Start/End: Original strand, 4554682 - 4554785
Alignment:
Q  190 aattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatcttttttcacactca 287  Q
    |||| ||| |||||||| |||||  ||| || ||||||| ||||||||||||||||  ||  ||||||||||||||||||||  | ||||| ||||||||    
T  4554682 aattgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccaggtttttttccacactca 4554781  T
Q  288 ccac 291  Q
    ||||    
T  4554782 ccac 4554785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 42993248 - 42993200
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  42993248 ggtggcatttagggtgggtagaaggaattctatcccaccatggaaaagt 42993200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 18153480 - 18153434
Alignment:
Q  167 tggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||||    
T  18153480 tggcatttagggtgggtaggaggaattcttttccaccatgggaaagt 18153434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 7495306 - 7495232
Alignment:
Q  164 tggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtag 238  Q
    ||||| ||||||||||| ||||  ||||||||||||||||||| |||||| ||  || ||||||| || ||||||    
T  7495306 tggtgacatttagggtgggtagggggaattctttcccaccatgagaaagttaagcttgaccattagattaagtag 7495232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 16690411 - 16690369
Alignment:
Q  192 ttctttcccaccatgggaaagtaaatattaaccattaaataaa 234  Q
    |||||| ||||||||||||||||||| |||||||||| |||||    
T  16690411 ttcttttccaccatgggaaagtaaattttaaccattagataaa 16690369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 12877 - 12801
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacacca 269  Q
    ||||||||||||||||||| ||| || ||||||| ||||| ||||||||||    ||||||||||||||||||||||    
T  12877 tttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacacca 12801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 34716162 - 34716206
Alignment:
Q  162 tatggtggcatttagggtgagtagaaggaattctttcccaccatg 206  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||    
T  34716162 tatggtggcatttagggtgggtagagggaatactttcccaccatg 34716206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 10607392 - 10607351
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatg 206  Q
    |||||||||||||||| ||||| ||||| |||||||||||||    
T  10607392 ggtggcatttagggtgggtagagggaatactttcccaccatg 10607351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 19063660 - 19063708
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||| ||||| |||| |||||| |||||| |||||||||||||    
T  19063660 ggtggcattttgggtgggtaggaggaatactttccaaccatgggaaagt 19063708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 20687464 - 20687512
Alignment:
Q  165 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 213  Q
    |||||||||||||||  |||| |||||| |||||||||||| |||||||    
T  20687464 ggtggcatttagggtaggtaggaggaatactttcccaccataggaaagt 20687512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 43236 - 43200
Alignment:
Q  195 tttcccaccatgggaaagtaaatattaaccattaaat 231  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  43236 tttcccatcatgggaaagtaaatcttaaccattaaat 43200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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