View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7728_low_12 (Length: 303)
Name: NF7728_low_12
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7728_low_12 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 3565751 - 3566022
Alignment:
| Q |
11 |
aagaacctccgttgttttaaattccagaagaaggggatgatagtggtcagaggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaac |
110 |
Q |
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| T |
3565751 |
aagaatctccgttgttttaaattccagaagaaggggatgatagtgctcagaggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaac |
3565850 |
T |
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| Q |
111 |
caatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcgtccctctcttccatttttccatgtaaaaagcgcgccctttgttggtaaat |
210 |
Q |
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| T |
3565851 |
caatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcatccctatcttccatttttccatgtaaaaagcgcgccctttgttggtaaat |
3565950 |
T |
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| Q |
211 |
gtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagttgccct |
282 |
Q |
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| T |
3565951 |
gtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagtttccct |
3566022 |
T |
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Target: scaffold0019 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 139827 - 140100
Alignment:
| Q |
6 |
gtgagaagaacctccgttgttttaaattccagaagaaggggatgatagtggtcagaggtgagccttattaaagttgaacgagatgttgtgctacatgcat |
105 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
139827 |
gtgaaaagaacctctgttgttttaaattccagaagaaggggat---agtggtcagaggtgagccttattaaagttgaacaagatgttgtgctacatgcat |
139923 |
T |
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| Q |
106 |
ctaaccaatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcgtccctctcttccatttttccatgtaaaaagcgcgccctttgttgg |
205 |
Q |
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| T |
139924 |
ctaaccaatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcttccctttcttccatttttccatgtaaaaagcgcgccctttgttgg |
140023 |
T |
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| Q |
206 |
taaatgtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagttgccct |
282 |
Q |
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| T |
140024 |
taaatgtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagtttccct |
140100 |
T |
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