View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7728_low_18 (Length: 241)
Name: NF7728_low_18
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7728_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 3215996 - 3216094
Alignment:
| Q |
124 |
acttgaacaattgccactttgagcattgtatctcttaatccaatcacaatggaggcagcagccattagggcaggaccaaaaagaaatttaagtcccatt |
222 |
Q |
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| T |
3215996 |
acttgaacaattgccactttgagcattgtatctcttaatccaatcacaatggaggcaacagccattagggcaggaccaaaaagaaatttaagtcccatt |
3216094 |
T |
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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3215873 - 3215915
Alignment:
| Q |
1 |
caaaaacaaaaggaacaattccttggggtagagctgcctatgc |
43 |
Q |
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| T |
3215873 |
caaaaacaaaaggaacaattccttggggtagagctgcctatgc |
3215915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2032997 - 2033035
Alignment:
| Q |
1 |
caaaaacaaaaggaacaattccttggggtagagctgcct |
39 |
Q |
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| T |
2032997 |
caaaaacaaaaggaacaattccttgtggtagagctgcct |
2033035 |
T |
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