View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7728_low_2 (Length: 635)
Name: NF7728_low_2
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7728_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 19 - 620
Target Start/End: Complemental strand, 30715882 - 30715281
Alignment:
| Q |
19 |
gaatccccataagttctgaccttaactcctcaacgggttcaatttcgtaataggcttgtaaaaacgacaacttgatttcatcccatgaaagagaaatgta |
118 |
Q |
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| T |
30715882 |
gaatccccataagttctgaccttaactcctcaacgggttcaatttcgtaataggcttgtaaaaacgacaacttgatttcatcccatgaaagagaaatgta |
30715783 |
T |
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| Q |
119 |
ataaggctcgatgttgaggtcgtaccatagtgcagattcttcttcaagtgtgacagggaagatcttcttttgcatttcaacggaggatgcattgtttgct |
218 |
Q |
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| T |
30715782 |
ataaggctcgatgttgaggtcgtaccatagtgcagattcttcttcaagtgtgacagggaagatcttcttttgcatttcaacggaggatgcattgtttgct |
30715683 |
T |
|
| Q |
219 |
ctacatactttgttgaaacgactcaaatgggttattggggattcgtttggagtgccatgaaaaattggtaaaggagcgattggtatgtatgaagatgcat |
318 |
Q |
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| T |
30715682 |
ctacatactttgttgaaacgactcaaatgggttattggggattcgtttggagtgccacgaaaaattggtaaaggagcgatttgtatgtatgaagatgcat |
30715583 |
T |
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| Q |
319 |
tcatgggttgtgtgggatttgggacattataagaagaaactgaagggctttctggaacattgccaatgtgtgcttcttgtgagaaagatggtttaccatg |
418 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30715582 |
tcatgggttgtgtgggatttcggacattataagaagaaactgaagggctttctggaacattgccaatgtgtgcttcttgtgagaaagatggtttaccatg |
30715483 |
T |
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| Q |
419 |
tggtgcattggacaaggattcagaaacatcatcgtcatcgtcatcattgtcttcttcctctttttcggtttcatcttcaaattgtcggtgttgatcctct |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
30715482 |
tggtgcattggacaaggattcagaaacatcatcgtcatcgtcatcattgtcttcttcctcttcttcggtttcatcttcaaactgtcggtgttgatcctct |
30715383 |
T |
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| Q |
519 |
tgagatttagaatccacatcgtttgcatcagtactattattatcgttgtcctcgtctttgtattcttctgataacttttgttttggaattctattatgat |
618 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30715382 |
tgagattcagaatccacatcgtctgcatcagtactattattatcgttgtcctcgtctttgtattcttctgataacttttgttttggaattctattatgat |
30715283 |
T |
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| Q |
619 |
gt |
620 |
Q |
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| T |
30715282 |
gt |
30715281 |
T |
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