View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7728_low_3 (Length: 634)
Name: NF7728_low_3
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7728_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 2 - 618
Target Start/End: Original strand, 27839279 - 27839895
Alignment:
| Q |
2 |
cacaaatttccaacaaataacttaactatagatatgtttctcacacaatacgtagaatgatagtcatttgtcatgctttagtacttttattcatccataa |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27839279 |
cacaaatttccaacaaataacttaactatagatatgtttctcacacaatacgtagaatgatagtcatttgtcatgctttagtacttttactcatccataa |
27839378 |
T |
|
| Q |
102 |
gcaaagaagcataattgataatacataagatttaactaaggcaccgacactgtcaattaatcataaccattagatcattacagatattgactttaatcat |
201 |
Q |
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| T |
27839379 |
gcaaagaagcataattgataatacataagatttaactaaggcaccgacactgtcaattaatcataaccattagatcattacagatattgactttaatcat |
27839478 |
T |
|
| Q |
202 |
atctaccttaaaagcgatacaaaatatggtttgttaatggttgacaaagtttttcgaccaatatcgaatcaaaattaattcatttcaaatgcaaaacaaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27839479 |
atctaccttaaaagcgatacaaaatatggtttgttaatggttgacaaagtttttcgaccaatatcgaatcaaaattaattcatttctaatgcaaaacaaa |
27839578 |
T |
|
| Q |
302 |
actttattcggggttacatgaaatttctaatgctcattgaacttcctctcatttttaataccatcaaaattacaataaaaccatcaaccacaaaagctag |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27839579 |
actttattcggggttacatgaaatttctaatgctcattgaacttcctctcattttgaataccatcaaaattacaataaaaccatcaaccacaaaagctag |
27839678 |
T |
|
| Q |
402 |
tagtataaaaactttagaaaattaccaatcaatgaactccaaagtctaatgaaacttgagcaatgaagaacaaattctactaatgttttaatttttatgg |
501 |
Q |
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| T |
27839679 |
tagtataaaaactttagaaaattaccaatcaatgaactccaaagtctaatgaaacttgagcaatgaagaacaaattctactaatgttttaatttttatgg |
27839778 |
T |
|
| Q |
502 |
taaatattttatcatcacttccttagctcctttcattggtaatttgcccacataaaaatcaattaccagaaaactaatcaaacattgttgtttacttgca |
601 |
Q |
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| T |
27839779 |
taaatattttatcatcacttccttagctcctttcattggtaatttgcccacataaaaatcaattaccagaaaactaatcaaacattgttgtttacttgca |
27839878 |
T |
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| Q |
602 |
ctaatctgtgaaggacc |
618 |
Q |
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| T |
27839879 |
ctaatctgtgaaggacc |
27839895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 23139672 - 23139716
Alignment:
| Q |
160 |
aatcataaccattagatcattacagata-ttgactttaatcatat |
203 |
Q |
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| T |
23139672 |
aatcataaccactagattattacagatatttgactttaatcatat |
23139716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 13309377 - 13309440
Alignment:
| Q |
152 |
tgtcaattaatcataaccattagatcattacagata-ttgactttaatcatatctaccttaaaa |
214 |
Q |
| |
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|||||| |||||||||| ||| |||||||||||||| |||| ||||| || ||||||||||||| |
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| T |
13309377 |
tgtcaagtaatcataactatttgatcattacagatatttgaatttaaacacatctaccttaaaa |
13309440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 26878967 - 26879029
Alignment:
| Q |
153 |
gtcaattaatcataaccattagatcattacagatatt-gactttaatcatatctaccttaaaa |
214 |
Q |
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|||||||||||||||||||||||| ||| | ||||| ||||||| |||||| |||||||||| |
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| T |
26878967 |
gtcaattaatcataaccattagattatttaaaatattagactttagtcatatttaccttaaaa |
26879029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 39156747 - 39156662
Alignment:
| Q |
151 |
ctgtcaattaatcataaccattagatcattacagatatt-gactttaatcatatctaccttaaaagcgatacaaaatatggtttgt |
235 |
Q |
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|||||||| ||||||||||||| ||||| || | ||||| ||||| ||||||| ||||||||||| ||||||| ||||||||| |
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| T |
39156747 |
ctgtcaatcaatcataaccattggatcaataaaaatatttgacttcaatcatacataccttaaaagtcatacaaatgatggtttgt |
39156662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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